Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0997 ATGGAATTAAATTTAAAAAGAATATCAATTCAATATTACAACCTCAAAAGCGTTTTGTTTGTCGTTAGTTTTCCATGGGAACTCGAAGATCTAGCTAGAAGCCAAAACAAAAAGTCTTCAACGATGGCGATCCTATACGCTTTGGTGGCCAGGGGCACGGTGGTGCTGGCGGAGTTCAGCGCCGTCACCGGCAACACAGGCGCCGTCGCCCGCCGTATAATCGAGAAGCTTCCGGAGGAGTCCGACTCCCGCCTTTGCTTCTCTCAGGATCGCTACATCTTTCACATACTCCGATCCGATGGCCTCACCTACCTCTGTATGGCCAACGACACCTTCGGAAGGAGAATTCCTTTCTCATACTTAGAAGATATCCAAATGAGGTTTATGAAGAACTACGGTAGAGTTGCCAATTATTCACCAGCTTATGCAATGAATGATGAGTTTTCAAGGGTTTTGCATCAGCAAATGGAATTTTTCTCTAGTAATCCTAGTGTTGATGCCCTAAATCGTGTGAGGGGTGAAGTTAGTGAGATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTCGTTGATAAGACAGCAACAATGCAAGACAATTCATTTCACTTTAGGAAACAGTCAAAGCGCCTTCGAAGAGCGCTATGGATGAAAAATTTCAAGCTCCTCGCATTATTGACATGCTTGATTGTTCTCATTCTTTACTTCATAATCGCTGCTTGTTGCGGAGGCATCACTCTACCATCCTGCAGATCCTAA 786 0.4427 MELNLKRISIQYYNLKSVLFVVSFPWELEDLARSQNKKSSTMAILYALVARGTVVLAEFSAVTGNTGAVARRIIEKLPEESDSRLCFSQDRYIFHILRSDGLTYLCMANDTFGRRIPFSYLEDIQMRFMKNYGRVANYSPAYAMNDEFSRVLHQQMEFFSSNPSVDALNRVRGEVSEIRTIMVDNIEKILERGDRIELLVDKTATMQDNSFHFRKQSKRLRRALWMKNFKLLALLTCLIVLILYFIIAACCGGITLPSCRS* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0997 261 ProSitePatterns Synaptobrevin signature. 185 204 IPR001388 GO:0016021|GO:0016192
Lja3g0997 261 PANTHER SNARE PROTEINS 42 260 - -
Lja3g0997 261 SUPERFAMILY SNARE-like 44 159 IPR011012 -
Lja3g0997 261 Gene3D - 166 250 - -
Lja3g0997 261 PRINTS Synaptobrevin signature 172 191 IPR001388 GO:0016021|GO:0016192
Lja3g0997 261 PRINTS Synaptobrevin signature 192 211 IPR001388 GO:0016021|GO:0016192
Lja3g0997 261 PRINTS Synaptobrevin signature 228 247 IPR001388 GO:0016021|GO:0016192
Lja3g0997 261 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 167 227 IPR042855 -
Lja3g0997 261 SUPERFAMILY SNARE fusion complex 162 229 - -
Lja3g0997 261 CDD R-SNARE 166 225 - -
Lja3g0997 261 Pfam Regulated-SNARE-like domain 70 149 IPR010908 -
Lja3g0997 261 Gene3D Longin domain 29 165 - -
Lja3g0997 261 SMART Longin_2 69 151 IPR010908 -
Lja3g0997 261 ProSiteProfiles Longin domain profile. 48 152 IPR010908 -
Lja3g0997 261 CDD Longin 45 159 IPR010908 -
Lja3g0997 261 Pfam Synaptobrevin 165 252 IPR042855 -
Lja3g0997 261 PANTHER LONGIN-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 42 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0997 Lja-Chr3 10242546 10246244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0997 42 261 Miscellaneous Gene Families AT5G22360 87.330 1.78e-146 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0997 K08515 - gmx:100808089 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0997 3 10242546 10246244 Lja3g0997 3 10242546 10246244 ECH