Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0987 ATGGCGGTGAGGGCCACAGTGTCGCGGTTCCCGATCGACGCCGACGCACGCGAGGGATCGGGCCTCCTATGGGGAGTAACAGTCACGCCCTTCGCCGCCGTCGACGAGAACGCCCAATCTCCGGCCTACGGATCCGACGGCGACCTCTTGCCACGCTGCGAGAATTGCTGGGCCTACTTCAACACCTACTGCGAGCTCGAACAATGGAGTTGGGCTTGCTCCCTCTGCGGCAACCTCAACGGCCTCAATTCCACTGCCATCGCACGCTACTCTCGCCCTCAATCTTGCCCCGAGATGATGTCCTCCTTCGTAGATCTCGAACTTCCTGCTGGGGAGTCTGATGAGGATGCAGCATTGCAAGCTTGTCCGGTGTATGTTGCTGCAGTTGACTTGTCATCTTCAGAAGAGTTTCTGGAACTCACTAAAAGTGCATTGCTGGCAGCTTTGGAAGCTATTCCTCCCGGTTCACTTTTTGGGCTTGCTACGTTCAGCTACAAACTAGGATTGTATGATGTTCAAGGTCCAATACCTGTTGTGAAAAATGTTTTCATCCCTCCTGATGCAGAGGGAACCTTACAAATTGAGCTTGAAGATGTCATGCCTTTGTTGCAGTTTCTGGCTCCCGTGGGAACTTGCAAGGACCGTATTGCATCTGCACTTGAAACACTTAGACCAACAACTTCATGGGAGAGAACCACAGCAGCAGGTCAAGGATTGGATGGTGTTCTGATTGGTGGGCGTGGTTTTGGTGTGGCAATGGAAGCCCTTTGCAGTTATCTTGGATCGGAATATGGGAACACTTTTGCTTTAGCTAGAATCTTTGCCTTCTTATCTGGTCCCCCTGATTATGGAGCTGGACAATTGGACACAAGACGATATGGTGAGCAATATGCAAGCAAAGGAGAGGATGCAGATCGTGCTTTACTCCCAGAGCAGACACCATTTTACAAAGATCTGGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTTGCTGTAACAAATGAGTACACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTGGGGGTTCCTTATTTTTATATACAAGTACTGAGGATTCAACTTTGCCTCAGGACATGTATCGGATGCTGAGTCGACCATATGCTTTTGGTTGTGTCTTGCGATTAAGAACCTCAACTGAATTCAAACCTGGCAATTCGTATGGACACTTCTTTCCAGATCCACAGTATGAAAATGTTCAACACATCATATGTTGCGATTCTTATGCTACATATGCTTATGACTTTGTGTTTGAGAACAACATTGGATTTTCAAGAAATAAAGCAGACGCTCCTACACTTCAGATTGCGTTTCAGTATGCAGTTGTAGTTCCTCCTCAGGAGCTTTCCAATTCAGAAGGGGTTTCGACAAGCAGAACCAAGCATTCCCTCCAACGTCGGCTAAGAATCCGAACATTACAGTTTGGTGTTGCTAAGAACATTCATGAACTTTACGACAGCTGTGATTCAGAAGTTGTTCTATCTTTGCTCGTTCACAAGGTAATACTAGCATCTTTGGAGGAAGGAGTTCGGGAGGGTAGAATTTTGCTTCAAGAATGGCTAGTGATCCTTGCGGCTCAGTACAATGATGCTTATAAACTTGTTCAGTATACTAATGAAAGTTCCATAAGATCTCAGCTTGATGTCGCATTCTCTCAATGTCCTCAACTGCAGCCCCTTCCGCGCCTAATTTTTGCTCTCCTCCGAAATCCTCTTCTTCGCTTCCATGAAGAAGGTGTTCACCCTGACTATCGCATCTATCTTCAATGCCTTTTTAGTGTGTTGGAACCAAGTTCCCTACATCGTGCTGTGTATCCAGTATTGACATCATATGCTACTCCAGACCAACAAGCATATCCTCGCCATTCATTGAGTCGTGCTGCACTGATTACCAGCGGCAGTCCAATATTTTTCCTCGATGCATTCACAGTTCTGATTGTGTTTTATTCTTCAACTGCGGACCCAACACTTCCTTTTCCTCCACCCCATGATTGTTTATTAAGGACTACAATCAACAAATTGAAGCAAGAGAGGTGCATCACTCCTAAACTCATTTTTATTCGAGGAGGACATGACGATGCCTCGATTTTTGAGAACTTTCTGATTGAAGAGCAGGATGTTGATGGAAGCGGTCTTACAAGTGTGATGGGTTTTGTTTCTTTCCTTGAAGATATTACGCAGAAAGTTCTAGAATTCATGAAATAG 2238 0.4571 MAVRATVSRFPIDADAREGSGLLWGVTVTPFAAVDENAQSPAYGSDGDLLPRCENCWAYFNTYCELEQWSWACSLCGNLNGLNSTAIARYSRPQSCPEMMSSFVDLELPAGESDEDAALQACPVYVAAVDLSSSEEFLELTKSALLAALEAIPPGSLFGLATFSYKLGLYDVQGPIPVVKNVFIPPDAEGTLQIELEDVMPLLQFLAPVGTCKDRIASALETLRPTTSWERTTAAGQGLDGVLIGGRGFGVAMEALCSYLGSEYGNTFALARIFAFLSGPPDYGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAVTNEYTDLASLKFLSIESGGSLFLYTSTEDSTLPQDMYRMLSRPYAFGCVLRLRTSTEFKPGNSYGHFFPDPQYENVQHIICCDSYATYAYDFVFENNIGFSRNKADAPTLQIAFQYAVVVPPQELSNSEGVSTSRTKHSLQRRLRIRTLQFGVAKNIHELYDSCDSEVVLSLLVHKVILASLEEGVREGRILLQEWLVILAAQYNDAYKLVQYTNESSIRSQLDVAFSQCPQLQPLPRLIFALLRNPLLRFHEEGVHPDYRIYLQCLFSVLEPSSLHRAVYPVLTSYATPDQQAYPRHSLSRAALITSGSPIFFLDAFTVLIVFYSSTADPTLPFPPPHDCLLRTTINKLKQERCITPKLIFIRGGHDDASIFENFLIEEQDVDGSGLTSVMGFVSFLEDITQKVLEFMK* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0987 745 Gene3D von Willebrand factor, type A domain 122 379 IPR036465 -
Lja3g0987 745 SUPERFAMILY Zn-finger domain of Sec23/24 47 109 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lja3g0987 745 Gene3D Sec23/Sec24 helical domain 470 629 - -
Lja3g0987 745 PANTHER SEC24-RELATED PROTEIN 1 743 - -
Lja3g0987 745 SUPERFAMILY beta-sandwich domain of Sec23/24 3 499 - -
Lja3g0987 745 Pfam Sec23/Sec24 helical domain 500 612 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lja3g0987 745 Gene3D - 32 101 - -
Lja3g0987 745 PANTHER OJ000126_13.4 PROTEIN 1 743 - -
Lja3g0987 745 SUPERFAMILY Helical domain of Sec23/24 500 616 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lja3g0987 745 Pfam Sec23/Sec24 trunk domain 122 374 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lja3g0987 745 SUPERFAMILY vWA-like 123 377 IPR036465 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0987 - - gmx:100807557 1414.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0987 3 10122943 10130728 Lja3g0987 3 10122943 10130728 ECH