Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0972 ATGAAGGTTGAGACTAGGTCGCATGTTCATGAGACAAGGAAGCAGAAGGCAGAGTCCAAGTCACATGATGCAGAACACTCTCCTAAGAAGGCCAAGTTGGAAACTGAGGATGGTCAAACCAATGGAAAATCTGCAACTGATGTTTTAGAAGAATATGATGAGTTCTGTAAAGCCACAAAGGAGCACCTCACTTCAGAGCAAATGAAGGAGATTTTGGAGGCTAATGGACTTGATTCCTCTGGCTCTAATATAGAAATTACACGAAGATGCCAAGACTTGATGTTTTTTGGTGCATTGGAGAAATGCTCTGTTTGCAATGGCAATTTGGAGTTTGATGGCAGGCGTTATGCTTGCAAAGGGTTCTATAGTGAGTGGTGTAGTTGCACTTTCAGCACCAGGGACCCTCCAAGGAAAGAGGAACCCATTAAGCTACCAGATTCTGTCCAGAACTCTTTGGTTTCAGATTTGCTGAAGAAATATCAGGATCCGAGTCAAAGGCCTCAGAGAGATTTAAGCTCAGTTTTGGACAAGCCTTTTACTGGAATGATGATATCTCTGATGGGTCGTCTTAGTAGGACACATCATTATTGGAAAGCAACTATTGAGAAGCATGGAGGGAAGGTGGCAAATTCTATCATTGGGGCAACTTGTTTGGTGGCTTCACCAGCTGAGCGAGACCGAGGTGGCACATCCAAACTTGCAGAAGCCATGGAGAGGGGCATACCTGTGGTTAGGGAGGGTTGGTTAACTGATAGCATGGAGAAGCAAGAACCACAACCTTTAGAAGCTTATGATCTTGTCTCTGATCTTTCTGTGGCTGGCAAGGGAATCCCATGGGACAAACAAGACCCTGGGGAGGAGGCTATTGAATCACTCTCAGCAGAACTCAAGCTATCTGGGAAGAGAGGGGTCTATAAAGATTCCAAGTTGCAGGATCAAGGTGGAAAGATATTTGAAAGAGATGGGATATTGTACAATTGTGCCTTCTCTGTTTGTGACCAAGGACGAGAACTAAATGACTACTGTGTCATGCAACTGATTATGGTCCCAGAGAATCGTTTGCACCTCTACTTTAAAAAGGGTAGAGTTGGAGATGATCCAAAAGCAGAGGAGCGAGTAGAAGAGCATGAGAATGTTGACAATGCTGTTAAGGAGTTTGTAAGGCTCTTTGAGGAAATAACAGGAAATGAATTTGAATCATGGGAAAGAGAGAAGAAGTTCCAGAAGAAGCCATTGAAGTTTTACCCTATTGACATGGATGATGGAGTTGAAGTTAGACATGGAGCACTTGGACTTAGGCAGCTAGGAATAGCAGCAACACATTGCAAACTTGAGCCTATGGTTGCAAATTTTATGAAGGTTTTGTGCAGCCAGGGGATATATAAGTATGCATTGATGGAGATGGGTTATGATTCACCAGACCTTCCAATAGGAATGGTTACAAATCTTCACCTGAAAAGATGTGAGGAAGTCTTGTTAGAATTCATAGAGAAGGTGAAGTCATTGAAAGAGACTGGGCCAAAGGCTGAGGCTGTTTGGTCTGATTTTAGCCAGAGATGGTTCACACTGATGCACTCCACAAGGCCTTTCATTTTTAGGGATTATCAGGAGATTGCAGATCATGCTGCTGCTGCCTTGGAGAGTGTTCGAGACATAACCCTTGCTTCTCACCTCATAGGAGATATGAGTGGCTCTACCATTGATGACCCATTGTCAGACACATATAGTAAATTGGGTTGCTCAATTTCTCCCTTGGAGAAAAATTCAGATGATTATGAGATGATTGTGAAGTACCTTGAAAAAACTTATGAACCAGTCAAAGTTGGTGACTGTGAATATGGGGTGTCAGTTGAAAATATTTTTGCTGTGGAACCAAGTGCTGGTCCTTCCTATGAAGACATAGTCAAGATGCCAAATAAGGTTCTTCTATGGTGTGGATCACGAAGCTCAAATCTTCTGAGGCACTTGCACAAGGGGTTCTTGCCAGCAATATGCTCGCTACCAGTTCCGGGTTATATGTTTGGCAAAGCTATTGTTTGCTCCGATGCTGCAGCAGAGGCTGCTAGGTATGGTTTCACTGCTGTGGACAGGCCAGAAGGGTTCTTGGTTTTGGCCATTGCTTCTCTAGGAAATGAGATTACCGAGTTGAAAAGCCCACCAGAGGATACAACACCTTTGGAGGAAAAGAAGCTTGGAGTGAAGGGGTTGGGGAAGAAGAAAACAGATGAATCAGAACATTTTGTTTGGAAAGATGACATAAAAGTCCCTTGTGGACGAATAATTCCATCAGAGCATGAAGATAGCCCCCTGGAATATAATGAATATGCTGTCTACGATCCTAAGCAGGTACGTATAAGCTACTTGGTGGGAGTGAAGTATGAAGAGAAAGGCACTGTGATGGACACAGCAGAGTGA 2415 0.4356 MKVETRSHVHETRKQKAESKSHDAEHSPKKAKLETEDGQTNGKSATDVLEEYDEFCKATKEHLTSEQMKEILEANGLDSSGSNIEITRRCQDLMFFGALEKCSVCNGNLEFDGRRYACKGFYSEWCSCTFSTRDPPRKEEPIKLPDSVQNSLVSDLLKKYQDPSQRPQRDLSSVLDKPFTGMMISLMGRLSRTHHYWKATIEKHGGKVANSIIGATCLVASPAERDRGGTSKLAEAMERGIPVVREGWLTDSMEKQEPQPLEAYDLVSDLSVAGKGIPWDKQDPGEEAIESLSAELKLSGKRGVYKDSKLQDQGGKIFERDGILYNCAFSVCDQGRELNDYCVMQLIMVPENRLHLYFKKGRVGDDPKAEERVEEHENVDNAVKEFVRLFEEITGNEFESWEREKKFQKKPLKFYPIDMDDGVEVRHGALGLRQLGIAATHCKLEPMVANFMKVLCSQGIYKYALMEMGYDSPDLPIGMVTNLHLKRCEEVLLEFIEKVKSLKETGPKAEAVWSDFSQRWFTLMHSTRPFIFRDYQEIADHAAAALESVRDITLASHLIGDMSGSTIDDPLSDTYSKLGCSISPLEKNSDDYEMIVKYLEKTYEPVKVGDCEYGVSVENIFAVEPSAGPSYEDIVKMPNKVLLWCGSRSSNLLRHLHKGFLPAICSLPVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITELKSPPEDTTPLEEKKLGVKGLGKKKTDESEHFVWKDDIKVPCGRIIPSEHEDSPLEYNEYAVYDPKQVRISYLVGVKYEEKGTVMDTAE* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0972 804 SMART BRCT_7 176 256 IPR001357 -
Lja3g0972 804 SUPERFAMILY WGR domain-like 290 419 IPR036930 -
Lja3g0972 804 Gene3D - 98 161 IPR038650 -
Lja3g0972 804 MobiDBLite consensus disorder prediction 1 37 - -
Lja3g0972 804 Gene3D - 579 795 - -
Lja3g0972 804 MobiDBLite consensus disorder prediction 1 43 - -
Lja3g0972 804 CDD parp_like 441 792 - -
Lja3g0972 804 Gene3D - 12 97 - -
Lja3g0972 804 Gene3D BRCT domain 172 272 IPR036420 -
Lja3g0972 804 ProSiteProfiles BRCT domain profile. 174 266 IPR001357 -
Lja3g0972 804 Pfam WGR domain 325 403 IPR008893 -
Lja3g0972 804 SMART PADR1_2 86 139 IPR012982 -
Lja3g0972 804 CDD BRCT_PARP1 179 252 - -
Lja3g0972 804 Pfam PADR1 (NUC008) domain 88 138 IPR012982 -
Lja3g0972 804 ProSiteProfiles SAP motif profile. 60 94 IPR003034 -
Lja3g0972 804 ProSiteProfiles PARP catalytic domain profile. 569 800 IPR012317 GO:0003950
Lja3g0972 804 PANTHER POLY [ADP-RIBOSE] POLYMERASE 10 796 - -
Lja3g0972 804 SUPERFAMILY BRCT domain 176 278 IPR036420 -
Lja3g0972 804 Pfam Poly(ADP-ribose) polymerase catalytic domain 589 792 IPR012317 GO:0003950
Lja3g0972 804 ProSiteProfiles PARP alpha-helical domain profile. 441 560 IPR004102 GO:0003950
Lja3g0972 804 CDD WGR_PARP1_like 315 421 - -
Lja3g0972 804 Coils Coil 485 505 - -
Lja3g0972 804 SMART WGR_cls 325 408 IPR008893 -
Lja3g0972 804 Pfam BRCA1 C Terminus (BRCT) domain 177 253 IPR001357 -
Lja3g0972 804 Pfam Poly(ADP-ribose) polymerase, regulatory domain 442 575 IPR004102 GO:0003950
Lja3g0972 804 Gene3D - 437 578 IPR036616 GO:0003950
Lja3g0972 804 ProSiteProfiles WGR domain profile. 314 414 IPR008893 -
Lja3g0972 804 SUPERFAMILY ADP-ribosylation 578 795 - -
Lja3g0972 804 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 441 579 IPR036616 GO:0003950
Lja3g0972 804 PANTHER DNA LIGASE 10 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0972 Lja-Chr3 9989572 9994212 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0972 K10798 - gmx:100788978 1431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0972 3 9989572 9994212 Lja3g0972 3 9989572 9994212 ECH