Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0964 ATGGAGTTAGGAAGTATACTCCACTTTCTTCAGGACAAAACCATTTTAGTCACTGGAGCCACTGGCTTTCTTGCAAAAATCTTGTTGGAGAAGATATTGAGAGTTCAGCCAAATGTAAAGAAGCTTTATCTTCTTTTAAGAGCTGCAGATGCCAAATCTGCTGCTCATCGCTTGCACAATGAGATAATAGGGAAGGACTTGTTTAGATTGTCAAAGGAAAATTTGGGTGCAAATTTTATCCCCTTAATTTTGGAAAAGTGTACTCTGGTACCTGGAGACATTTCTCTTGAAGACTTGGGAGTGGAGGATTCTATTCTTAAGGAAGAGATTTACAATCAAACAGATGTTATTGTTAATTTAGCTGCCACTACTAACTTTGATGAAAGGTATGATATATCCTTGGGCCTAAATACCTTTGGAGTTAAGTATGTAATCGACTTTGCCAAAAAATGTACAAAACTCAAGGTTCTTGTGCATGTATCAACAGCATATGTATGTGGTGAGGAAGAAGGGCTAATATTAGAGCGCCCTTATCACTTGGGCGAGTCACTAAATGGAGTGCCTGGATTAGACATTGATGCAGAAGAGAAAGTTGTGAGGGACAAATTGGTTGAGTTAAGACAAGTGGGAGCATCAGAGGATGAAATTAAAGGGGTCATGAAGGACTTGGGCATTAGCAGGGCTAATTTTTATGGATGGCCAAACACATACGTATTCACCAAGGCAATGGGAGAGATGCTTGTGGGTCAACTCAAAGGAAACTTGTCAGTTGTTACTGTTCGTCCTACCATTATTACCAGTACATTTAAAGAACCTTTCCCTGGTTGGGCTGAAGGTGTAAGAACTATTGACAGTTTAGCTGTAGCCTATGGGAAAGGAAAATTAACATGCTTCCTTGGAGATCTCAAGGCAGTGGTTGATGCGATACCCGCTGACATGGTGGTGAATGCAATACTAGTGGCCATAGTGGCTCATGCGAATGGTCCTAGTGATAATTGTATATATAATATCGGTTCTTCTATTAGAAGACCTCTCAGATATGGCGATCTTCAAGATTTTGGCTTCAAATACTTCTCAGCAAAACCATGGATAAACAAGGATGGAAAGCCTGTCAAGGTTGGCAAAGTTACTGTATTGAGCAACATGGATAGCTTTCGGAGATACATGTTCATTCGCTACCTGCTTATGTTAAAGGGTCTTGAGCTGGTTAATACTGCATTCTGTCAGTTTTTCGAAGGAACATATCTTGATCTCAATAGGAAAATCCAGATTGTGATGCGATTAGTGGACCTTTACAAGCCTTACTTGTTCTTCAAGGGCGTATTTGATGACATGAATGTAGAGAGGTTGCGAGTTGCTGCAAGACAGGGTGGGGTGGAGACAGATTTGTTTTACTTTGACCCTAAAGTGATCGATTGGGAAGATTACTTTTTGAACACCCACCTCCCTGGTATTTTAATTGTTTTTTCTCCAATGGAATTGGGAAGCATTACTCACTTTCTTCAGGACAAGAATGTATTGGTCATTGGTGCCACTGGCTTCCTTGCCAAAATCTTTGTGGAGAAGGTATTGAGAGTTCAACCAAATGTGAAGAAACTTTATCTTCTTTTAAGAGCCACGGATGCAGAATCTGCTACTCGACGACTGCACAATGAGATTATGCGGAAGGACTTGTTTAGATTGTTGAAGGAAAATCTGGGTTTGAAGTTCAATAACTTTGTCTCTGAGAAGGTGACTGTGGTGCCCGGGGACATCTCTAAAGAGGACTTGAATTTGAAGGACTCTGTTTTACGTCAAGAGATTTGCAATCAAATTGATGTCATTGTTAATTTAGCTGCCACAACTAACTTTGACGAAAGATACGATGTTGCATTGGGTATAAATACATTTGGAGCCAAGCATATCTTAAGCTTCGCCAAAAATTGTATTAACCTTAAGGTGCTTGTTCATGTATCAACAGCATATGTTTGTGGCGAGAGAGGAGGGCTGATATTAGAGGATCCATGCCAATTGGGTGTGTCATTAAATGGAGTGCCAGGACTAGACATTGATGTGGAAAAGAAAGTGGTGGATGAGAAATTGAAGATGCTTAAAGAAGAGGGAGCCTCAGAAGATGAAATTAAAATGGCCATGAAGGACTTAGGTATGAAAAGAGCAAGTGTATATGGATGGCCAAACACTTATGTCTTCACAAAGGCGATGGGAGAAATGCTTGTAGGAACTTTAAAGGAAAACATGCCTGTTGTTATTCTACGCCCTACAATTGTTACTAGCACTTACAGAGAACCATTCCCTGGCTGGGTTGAAGGTGTAAGAACCATAGACAGTTTAATTGTTGCTTATGGTAAAGGAAAATTGACATGCTTCCTTGCGGACATTAAGGCGGTTTTTGATGTGATACCAGCTGACATGGTGGTGAATGCAATACTAGTGGCTATGGTGGGTAATGCAGATCAGCGCCCCTGTGATATGATATACCATGTTGGTTCCTCTGTTGCAAATCCAGTGAGATACCTTAATCTTGAAGACTACAACTTCAGATATTTTTCTGCAAAACCGTGTAAGGACAAGGAAGGAAAGCTTGTCAAGGTTAGCAGAGTCACAATATTGGACAACATGCCTAGCTTTCGGAGATATATGTTCATCCGCTACTTGCTTCCACTAAAGGGGCTAGAGCTAGTCAACACAGCTTTCTGCCAATATTTTCAGGGAATGTATCTTGACATTCACAGGAAGATCCACATTGTGATGCGGTTGGTTGACCTTTACAAGCCTTACTTGTTCTTCAATGGCGTATTTGATAACATGAATACAGAAAAGTTGCAAATAGCAGCAAAACAAGGGGAAGCAGAGATGGATGTGTTCTACTTTGATCCAAAAATGATTGATTGGGAGGACTACTTCATGAATATCCACATTCCTGGCATCGTCAAATATGTTGTCAAAGAGATCGAGAATGCGTACGAGAAAGAGAACGCGAACAGATCCAAAAGAATGAGAGAGATCGAGAACCCTCCAGAGAGAAAGCGAACAAGAAAGAGAGATTGTGCGTGTCGCAAATGA 3063 0.4071 MELGSILHFLQDKTILVTGATGFLAKILLEKILRVQPNVKKLYLLLRAADAKSAAHRLHNEIIGKDLFRLSKENLGANFIPLILEKCTLVPGDISLEDLGVEDSILKEEIYNQTDVIVNLAATTNFDERYDISLGLNTFGVKYVIDFAKKCTKLKVLVHVSTAYVCGEEEGLILERPYHLGESLNGVPGLDIDAEEKVVRDKLVELRQVGASEDEIKGVMKDLGISRANFYGWPNTYVFTKAMGEMLVGQLKGNLSVVTVRPTIITSTFKEPFPGWAEGVRTIDSLAVAYGKGKLTCFLGDLKAVVDAIPADMVVNAILVAIVAHANGPSDNCIYNIGSSIRRPLRYGDLQDFGFKYFSAKPWINKDGKPVKVGKVTVLSNMDSFRRYMFIRYLLMLKGLELVNTAFCQFFEGTYLDLNRKIQIVMRLVDLYKPYLFFKGVFDDMNVERLRVAARQGGVETDLFYFDPKVIDWEDYFLNTHLPGILIVFSPMELGSITHFLQDKNVLVIGATGFLAKIFVEKVLRVQPNVKKLYLLLRATDAESATRRLHNEIMRKDLFRLLKENLGLKFNNFVSEKVTVVPGDISKEDLNLKDSVLRQEICNQIDVIVNLAATTNFDERYDVALGINTFGAKHILSFAKNCINLKVLVHVSTAYVCGERGGLILEDPCQLGVSLNGVPGLDIDVEKKVVDEKLKMLKEEGASEDEIKMAMKDLGMKRASVYGWPNTYVFTKAMGEMLVGTLKENMPVVILRPTIVTSTYREPFPGWVEGVRTIDSLIVAYGKGKLTCFLADIKAVFDVIPADMVVNAILVAMVGNADQRPCDMIYHVGSSVANPVRYLNLEDYNFRYFSAKPCKDKEGKLVKVSRVTILDNMPSFRRYMFIRYLLPLKGLELVNTAFCQYFQGMYLDIHRKIHIVMRLVDLYKPYLFFNGVFDNMNTEKLQIAAKQGEAEMDVFYFDPKMIDWEDYFMNIHIPGIVKYVVKEIENAYEKENANRSKRMREIENPPERKRTRKRDCACRK* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0964 1020 PANTHER MALE STERILITY PROTEIN 2-RELATED 2 486 IPR026055 GO:0080019
Lja3g0964 1020 PANTHER MALE STERILITY PROTEIN 2-RELATED 493 981 IPR026055 GO:0080019
Lja3g0964 1020 CDD FAR-N_SDR_e 13 362 - -
Lja3g0964 1020 CDD FAR_C 882 980 IPR033640 -
Lja3g0964 1020 CDD FAR-N_SDR_e 504 853 - -
Lja3g0964 1020 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 339 IPR036291 -
Lja3g0964 1020 MobiDBLite consensus disorder prediction 994 1020 - -
Lja3g0964 1020 Gene3D - 498 872 - -
Lja3g0964 1020 Pfam Male sterility protein 393 485 IPR033640 -
Lja3g0964 1020 Pfam Male sterility protein 883 983 IPR033640 -
Lja3g0964 1020 PANTHER FATTY ACYL-COA REDUCTASE 2 486 - -
Lja3g0964 1020 PANTHER FATTY ACYL-COA REDUCTASE 493 981 - -
Lja3g0964 1020 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 497 828 IPR036291 -
Lja3g0964 1020 Gene3D - 8 377 - -
Lja3g0964 1020 CDD FAR_C 391 485 IPR033640 -
Lja3g0964 1020 Pfam Male sterility protein 510 809 IPR013120 -
Lja3g0964 1020 Pfam Male sterility protein 17 318 IPR013120 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0964 Lja-Chr3 9915668 9950613 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0964 601 980 Acyl Lipid Metabolism Gene Families AT4G33790 60.000 6.30e-166 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0964 K13356 - gmx:100798338 847.425