Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0960 ATGGAGTTGGGAAGCGTAATTGACTTCCTTCAGGACAAGAATGTTCTGGTCATCGGTGCCACTGGCTTCCTTGCCAAACTCTTTGTGGAGAAGGTACTTAGAGTTCAACCAAATGTGAAGAAACTTTATCTTCTATTGAGGGCCTCAGATGCTGAATCTGCCACTAAACGACTGCACAATGAGATTATAGAGAAGGACTTGTTTAGATTGTTGAAGGAAAATCTGGGTGCAAATTTTAATACCTTTGTCTCAGAAAAGTTAACTTTGGTGCCTGGGGACATCTCTCAAGTGGACTTGAATTTGAAGGACTCTGTTCTCCGTCAAGAGATTTGTAATCAAACTAATGTTATAATTCATTTTGCTGCCACAACTAACTTCCGTGAAAGATATGATGTTGCGTTGAGTATAAACACATTAGGAGTAAAGCATGTCTTAAACTTCGCCAAAAATTGTATTGACTTGAAGGTTCTTGTCCACGTATCAACAGCATATGTATGTGGCGAGGGAAGAGGGCTCATACTAGAGGATCCATACCAATTGGGTATGTCGCTAAATGGAATATCAGGACTAGACATTGATGTGGAAAAGAAAATTGTTGATGAGAAGCTGAGCATGCTTCAAGAAGAGGGAGCCTCAGAAAATGAAATTAAAATGGCTATGAAGGACTTGGGTATGAAAAGAGCAACTCAATTTGGATGGCCAAACACGTATGTTTTTACAAAGGCAATGGGAGAAATGCTTGTAGGAACTCTGAAGGAAAACATGTCTGTTGTTATTGTGCGGCCTACAATCGTTACCAGCACTTACAGAGAACCTTTCCCAGGTTGGATTGAAGATGTAAGAACCATTGACAATTATTTTGTTGCTTTTGGTAAAGGAATGTTAAAATGCTTCCTTGGGGACCTTAATGTAGTTTGTGACGCGATACCAGCTGACATGGTGGTGAATGCAATACTAGTAGCCATGGTGGCTCATGCAAATCATCCTTGTGATATCATATATCATGTGGGTTCCTCTGTTTCAAATCCAGTCACATACCATAATCTTGAAGACTACACCTTCAGATATTTTACTGCAAAACCATACATAAACACAGATGGAAAGCCTATCAAGATTGGCAAAGTTACAATACTGCACAACATGGATAGCTTTCATAGATACATGTTCATTCGTTACGTGCTTCCAGCAAAGGGGCTAGAGCTGGTTAATGCAGCATTTTGCCATTATTTTGAGCAAAAACGTCGTGACATAAACAGGAAGATCAAGATTGTAATGCAGTTGGTTGAAGTCTTCAAGCCTTACTGTTTCTTCAATGGCGTATTTGATAATATGAACACAGAAAAGTTGCAGATAGCAGCAAAACAAGGTGGGGTAGAAATGGATTTGTTTTACTTTGACCCAAAAATGATTGATTGGGAAGACTACATCATGAATATCCATTTCCCTGCTCTCGTCAAATATGCCTTCAAGTGA 1473 0.3944 MELGSVIDFLQDKNVLVIGATGFLAKLFVEKVLRVQPNVKKLYLLLRASDAESATKRLHNEIIEKDLFRLLKENLGANFNTFVSEKLTLVPGDISQVDLNLKDSVLRQEICNQTNVIIHFAATTNFRERYDVALSINTLGVKHVLNFAKNCIDLKVLVHVSTAYVCGEGRGLILEDPYQLGMSLNGISGLDIDVEKKIVDEKLSMLQEEGASENEIKMAMKDLGMKRATQFGWPNTYVFTKAMGEMLVGTLKENMSVVIVRPTIVTSTYREPFPGWIEDVRTIDNYFVAFGKGMLKCFLGDLNVVCDAIPADMVVNAILVAMVAHANHPCDIIYHVGSSVSNPVTYHNLEDYTFRYFTAKPYINTDGKPIKIGKVTILHNMDSFHRYMFIRYVLPAKGLELVNAAFCHYFEQKRRDINRKIKIVMQLVEVFKPYCFFNGVFDNMNTEKLQIAAKQGGVEMDLFYFDPKMIDWEDYIMNIHFPALVKYAFK* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0960 490 CDD FAR-N_SDR_e 13 361 - -
Lja3g0960 490 PANTHER MALE STERILITY PROTEIN 2-RELATED 2 488 IPR026055 GO:0080019
Lja3g0960 490 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 338 IPR036291 -
Lja3g0960 490 Pfam Male sterility protein 392 490 IPR033640 -
Lja3g0960 490 CDD FAR_C 390 489 IPR033640 -
Lja3g0960 490 PANTHER FATTY ACYL-COA REDUCTASE 2 488 - -
Lja3g0960 490 Gene3D - 8 370 - -
Lja3g0960 490 Pfam Male sterility protein 19 318 IPR013120 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0960 Lja-Chr3 9852101 9858422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0960 110 489 Acyl Lipid Metabolism Gene Families AT4G33790 56.053 1.16e-164 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0960 K13356 - gmx:100788994 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0960 3 9852101 9858422 Lja3g0960 3 9852101 9858422 ECH