Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0950 ATGGTTCTGGTCTTACAACCTTGTTCTTCTTCCGTCAGCGTCCTCCACCATGATCACCACCACCACCACCACCACCACCACCCCACCCGCAACGCCGTCGTTCGATGCAGCCTGCAGGAGATAACAGAGGAGCTAAGTAGCTCGAACCTCATCCATTTCCCTCCACTGAAAACGGCGAAGAGGGTGGTGCTGGTGAGGCACGGCCAGAGCACGTGGAATGCCGAGGGGAGGATACAAGGAAGTTCCGATTTCTCCGTTCTCACCAAGAAAGGAGAGTCTCAGGCTGAAACTTCACGCCAAATGCTCTTCGATGATAACTTCGATGTCTGCTTCTCCAGTCCTCTGGCACGGTCTAAGAGAACAGCTGAAATCATATGGGGACCTCGCCCTGTACCAATCATCCCCGAATTCGAGTTGCGGGAAATCGATTTGTACTCCTTTCAGGGTCTACTGAAGCATGAGGGACAAGAGAGATATGGTCCTGCTTTTCGTCAATGGCAGGTGGATGCCTCAAATTTCATCATTGATGGTCATTATCCAGTGAGAGAGTTGTGGGAGCGTGCTCGAAGCTCCTGGACTAAAATCCTAGCTCATGATAGCAGGTCTGTTCTTGTGGTTGCTCACAATGCTGTTAATCAGGCTCTTGTTGCCACAGCAATTGGTTTGGGATCAGAGTATTTCAGAGTTTTACTTCAGAGCAATTGTGGTGTAAGTGTGCTGGATTTCAACCCAAGACCCGAGGGTGGACCTCCACATATTTGCCTTAACCGCTTAAATCAGACACCTGGTTCACCTGTTGCTGGTGGAAAATCTGGAGGTAGAGAGTCAAGTAAGCGGATCGTACTGGTTTGTAATGGATCTACACAAGGAAATACAGAGAATGGTTTTCCTTTTGCTGCTGATCAACCGATGAACATGCTTGGTGTTATACAGTCCCAGAAATCTGCAGAGCTACTTCTTGACTTGAATGTGAATTCCATAATCAGTAGTCCTAACAAAGCTTCTGTTGAGACAGCCACGGCCATCTCCAAGGTACAAGAAGCTGCTGATTGCTTAGGTGCTGACTGTGTGCCACGCTATGTTGAGACAAAGCAGATGGAGAACCTTGATGTTGAAACGATCTTTAAACAATCCAAATCGGTTGTATCCAATTTTCCACCATTTCAGCCTGGGTGGTTAAATAGAGTTGAGGATGGATTTAGAACAGCATTATGGGACCAATCTGGAAAAGCCTGGGAATCCCTGTTGGGTGAAATACGTGATGAGTCTATGTCAGGAGATGTTGTAGTTGCAGTTGGTCATCCTATGATCCACATAGCAGTAATGACACACTGTCTTAATTTGACCAAAGACTGGTTGGGATCGTTCCATCTTGATGCTGGGAGCGTGAGTGTCATTGACTTCCCTGATGGACCTAAGGGAAGAGGTGTCATCAGGTGCATAAATTATACTGCACACTTGGGGAGATGGTCCATCCCTATTACAAGACCAACAGAGGATGTTGAAGAATTCTAA 1515 0.4719 MVLVLQPCSSSVSVLHHDHHHHHHHHHPTRNAVVRCSLQEITEELSSSNLIHFPPLKTAKRVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGESQAETSRQMLFDDNFDVCFSSPLARSKRTAEIIWGPRPVPIIPEFELREIDLYSFQGLLKHEGQERYGPAFRQWQVDASNFIIDGHYPVRELWERARSSWTKILAHDSRSVLVVAHNAVNQALVATAIGLGSEYFRVLLQSNCGVSVLDFNPRPEGGPPHICLNRLNQTPGSPVAGGKSGGRESSKRIVLVCNGSTQGNTENGFPFAADQPMNMLGVIQSQKSAELLLDLNVNSIISSPNKASVETATAISKVQEAADCLGADCVPRYVETKQMENLDVETIFKQSKSVVSNFPPFQPGWLNRVEDGFRTALWDQSGKAWESLLGEIRDESMSGDVVVAVGHPMIHIAVMTHCLNLTKDWLGSFHLDAGSVSVIDFPDGPKGRGVIRCINYTAHLGRWSIPITRPTEDVEEF* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0950 504 SUPERFAMILY Phosphoglycerate mutase-like 277 492 IPR029033 -
Lja3g0950 504 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 64 73 IPR001345 GO:0003824
Lja3g0950 504 Gene3D - 272 491 IPR029033 -
Lja3g0950 504 SUPERFAMILY Phosphoglycerate mutase-like 60 257 IPR029033 -
Lja3g0950 504 Gene3D - 60 262 IPR029033 -
Lja3g0950 504 CDD HP_PGM_like 279 479 IPR013078 -
Lja3g0950 504 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 423 504 - -
Lja3g0950 504 PANTHER 2-CARBOXY-D-ARABINITOL-1-PHOSPHATASE-RELATED 423 504 - -
Lja3g0950 504 PANTHER 2-CARBOXY-D-ARABINITOL-1-PHOSPHATASE-RELATED 23 245 - -
Lja3g0950 504 SMART PGAM_5 279 441 IPR013078 -
Lja3g0950 504 SMART PGAM_5 61 215 IPR013078 -
Lja3g0950 504 PANTHER 2-CARBOXY-D-ARABINITOL-1-PHOSPHATASE-RELATED 275 347 - -
Lja3g0950 504 Pfam Histidine phosphatase superfamily (branch 1) 62 244 IPR013078 -
Lja3g0950 504 Pfam Histidine phosphatase superfamily (branch 1) 280 471 IPR013078 -
Lja3g0950 504 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 275 347 - -
Lja3g0950 504 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 23 245 - -
Lja3g0950 504 CDD HP_PGM_like 61 248 IPR013078 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0950 Lja-Chr3 9688249 9693349 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0950 K22200 - gmx:100798495 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0950 3 9688249 9693349 Lja3g0950 3 9688249 9693349 ECH