Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0942 ATGGCTGAATCTCAACCTGTTTTGATTCCTGAGACAATCCCTGGTGTGAATTACGACGTGGGTAGTCAGCTGAAGCTGATTTGGGATGTGATCAAAGCGCCATTGATCGTTCCCCTGCTGAATCTCTGCGTGTACGTTTGTTTGGCAATGGCTCTGATGCTGTTCATGGAGAGGGTTTACATGGGCATCGTCATCGTCCTCGTGAAGCTTTTCTGGAAGAAACCTGAACAGCGCTACAATTACGAGCCTCTACAAGACGATGAGGAACTTGGTGGTGCCAATTTCCCTGTGGTCCTCATTCAAATTCCAATGTTCAATGAAAAAGAGGTTTACAAGGTCTCCATTGGAGCAGCTTGTGGTCTTTCATGGCCTACAGATCGTCTCGTGATCCAAGTCCTCGATGATTCTACTGACCCAGTGGTCAAGCAATTGGTGGAGATGGAATGTCAAAGATGGGCTAGCAAAGGCATCAACATAACGTACCAAATCAGAGAGACCAGAGGGGGATACAAAGCGGGTGCACTCAAAGAAGGCCTAAAACGTAGCTATGTCAAACACTGCGAGTATGTGGCCATTTTCGACGCCGATTTCCGGCCGGAGCCCGATTTTCTCCGGCGAGCCATTCCCTTTTTGGTGGGGAACCCTGAACTTGCACTTGTTCAAGCTCGTTGGAGATTTGTGAATTCGGATGAGTGTCTATTGACAAGAATGCAAGAGATGTCACTGGATTACCATTTCACTGTGGAGCAAGAAGTTGGGTCAGCTACTCATGCTTTCTTTGGATTCAATGGCACAGCAGGTGTTTGGAGGATTGCAGCAATCAATGAAGCAGGAGGGTGGAAAGACAGAACAACTGTGGAAGATATGGACCTTGCTGTTCGTGCCAGTCTTAGGGGATGGAAATTTTTGTACCTTGGTGACCTCCAGGCAAAAAGTGAGCTTCCCAGTACTTTGAGAGCCTTCAGATTCCAGCAGCATCGATGGTCTTGTGGTCCTGCTAATCTGTTTCGCAAAATGGCCATGGAGATTATAAGGAACAAGAAAGTGAAGTTCTGGAAGAAAGTCTATGTCATATACAGTTTCTTCCTTGTTCGCAAAATCACAGCTCACATGGTCACATTCTTCTTCTACTGCGTCGTGATTCCCCTCACAATTTTGGTCCCTGAGGTTCATGTTCCCATATGGGGTGCTGTTTATATCCCTTCTGTCATCACTATCCTCAATTCAGTTGGAACACCAAGGTCCATTCATCTTCTGTTCTACTGGATCCTTTTCGAGAATGTGATGTCGCTGCACCGTACCAAAGCAACCATCATAGGTCTACTAGAATATGGAAGGGCCAATGAATGGGTTGTCACTGAAAAACTTGGAGATTCCGTCGCCAATAATAATAAGAAAACAGGAGATGCTGCTAAGAAGACTAATGTCAAAGCTACCAAGAAAACCAAATCCAAATTTCTGGAGAGACTTAATTACCTGGAGTTGGCATTCGCTGGCTTCCTGTTCTTGTGCGGGTGCTATGACTATGTCCATGGGAAGCACAACTACTTCATCTACCTCTTCCTTCAGACCTTATCCTTCACAATTGTTGGAGTTGGCTATGTTGGAACCATCGTGTAA 1620 0.458 MAESQPVLIPETIPGVNYDVGSQLKLIWDVIKAPLIVPLLNLCVYVCLAMALMLFMERVYMGIVIVLVKLFWKKPEQRYNYEPLQDDEELGGANFPVVLIQIPMFNEKEVYKVSIGAACGLSWPTDRLVIQVLDDSTDPVVKQLVEMECQRWASKGINITYQIRETRGGYKAGALKEGLKRSYVKHCEYVAIFDADFRPEPDFLRRAIPFLVGNPELALVQARWRFVNSDECLLTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGVWRIAAINEAGGWKDRTTVEDMDLAVRASLRGWKFLYLGDLQAKSELPSTLRAFRFQQHRWSCGPANLFRKMAMEIIRNKKVKFWKKVYVIYSFFLVRKITAHMVTFFFYCVVIPLTILVPEVHVPIWGAVYIPSVITILNSVGTPRSIHLLFYWILFENVMSLHRTKATIIGLLEYGRANEWVVTEKLGDSVANNNKKTGDAAKKTNVKATKKTKSKFLERLNYLELAFAGFLFLCGCYDYVHGKHNYFIYLFLQTLSFTIVGVGYVGTIV* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0942 539 PANTHER BNAC09G36340D PROTEIN 8 539 - -
Lja3g0942 539 Pfam Glycosyl transferase family group 2 189 380 IPR001173 -
Lja3g0942 539 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 87 315 IPR029044 -
Lja3g0942 539 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 375 IPR029044 -
Lja3g0942 539 PANTHER - 8 539 - -
Lja3g0942 539 CDD CESA_CaSu_A2 96 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0942 Lja-Chr3 9614404 9620297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0942 4 539 Miscellaneous Gene Families AT5G22740 79.554 0.0 897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0942 K13680 - gmx:100802752 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0942 3 9614404 9620297 Lja3g0942 3 9614404 9620297 ECH