Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0930 ATGGCTCCGATTTCGTCGGAGAACGGCGTCGAAGGAGACGATGAGAGAGAAGAACAAGAAGAAGAAGATGAAGAAGACGACGAAGAAGAGCCGAGGCTCAAGTACCAGAGAATGGGAGGCAGCGTGCCTTCACTCTTAGCCGCCGATGCCGCCTCGTGTATCGCCGTCGCGGAGCGGATGATCGCACTCGGAACTCACGCCGGCACCGTTCACATCCTCGATTTTCTTGGAAATCAGGTGAAAGAATTCTCTGCACATGCTTCTGTTGTCAACGACCTGAACTTTGACATAGAAGGTGAATATATTGGAAGCTGTTCTGATGATGGTTCAGTTGTTATAAACAGCCTTTTCACTGATGAGAAAATGAAATTCGAGTACCATCGCCCTATGAAGGCAATTGCGTTGGACCCCGAATATGCGAGGAAAATGTCTAGGAGGTTTGTTGCTGGTGGTTTAGCTGGTCATTTATATTTAAATTCCAAGAAATGGTTGGGCTATCGTGACCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCGGTTAAGTGGAGAGCGAGCCTTGTTGCTTGGGCTAATGATGCAGGAGTGAAGGTTTATGATACTGCCAATGAACAGCGCGTAACGTTTATTGAAAGACCACGAGCGAGCCCGCGCCCTGAGCTTTTGCTTCCTCATCTTGTCTGGCAGGATGACACTCTCTTAGTTATTGGCTGGGGAACATCGATCAAAATTGCTTCTATAAAGACAAATAGCTATAAAGCAGTCAATGGGACATTCAGGCAAGTTCCTTTGTCCAGTATGACCCAGGTGGATATTGTGGCGTCTTTCCAGACGAGCTATTTCATCTCAGGAATTGCCCCCTTTGGTGATGCTTTGGTTGTTCTAGCCTATATTCCTGGAGAAGAAGATGGAGATAAGGATTTTAGTAGCACTGCTCCTTCACGGCAGGGCAATGGACAAAGACCAGAAGTAAGAATCGTAACATGGAATAATGATGAACTTTCAACGGATGCTCTACCAGTGCATGGGTTTGAGCATTACAAGGCAAAGGACTATTCTCTTGCTCATGCTCCCTTCTCAGGCAGCAGTTATGCTGGTGGTCAGTGGGCTGCAGGTGATGAACCACTATACTATATTGTATCCCCAAAGGATGTAGTTATTGCAAAACCAAGGGATACTGAAGACCATATTGCTTGGCTTCTTCAACATGGATGGCACGAAAAAGCTTTAGCAGTGGTTGAATCTGGCCAGGGACGGAGTGAACTACTTGATGAGGTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATATGGTGAAGCAGCTTCTTTGTGTCCTAAGTTACTGCAAGGATCAGCTTCAGCATGGGAAAGGTGGGTCTTTCACTTTGCTCACCTTCGTCAACTCCCTGTTTTGGTCCCTTACATGCCTACAGAAAACCCCAGACTACGAGATACTGCTTATGAGGTTTCTCTTGTTGCATTGGCTACAAATCCATCTTTTCATAAGGATCTCTTGTCCACTGTAAAATCCTGGCCATCTGTAATTTATTCTGCATTACCTGTTATTTCAGCTATTGAACCTCAGCTAAGCACTTCCTCCATGACTGATTCGCTCAAGGAGGCATTAGCGGAGTTGTATGTAATCGATGGGCAATATGAGAAAGCCTTCTCATTGTATGCTGATCTCATGAAGCCAGAAGTGTTTGATTTCATTGATAAACACAACCTACATGATGCAATTCGTGAAAAGGTTGTCCAACTGATGATGCTAGATTGCAAACGTGCAGTTCCTCTGTTGATCCAGAATAGGGACATAACAAGTCCACCTGAGGTTGTGAAGCAGCTTATAAGAGCTGATAATAATTGTGACTGCAGATATTTTTTACATTTATATCTACATTCATTATTTGAAGTAAATCCACATGCTGGGAAAGACTTCCATGATATGCAGGTAGAACTGTATGCTGACTATGATCCAAAGATGCTGCTACCTTTTCTTCGTAGCAGTCAACACTATACCCTTGAGAAGGCACATGAAATTTGCATTAAAAGAGACCTAATGAGGGAGCAAGTCTTCATCTTAGGAAGGATGGGGAACTCAAAACAAGCCCTCGCCATTATTATAAATAAATTGGGGGATATAGAGGAGGCTGTAGAGTTTGTTACCATGCAGCATGATGATGAACTCTGGGAAGAACTAATCAAGCAATGCCTTCACAAGCCTGAGATGGTGGGCATACTATTGGAGCACACAGTTGGAAATCTTGATCCCCTCTACATTGTAAATAAGGTTCCTAACGGGTTGGAAATACCTAGGCTCAGGGATCGGCTGGTTAAAATTATCACTGATTACAGGACTGAAACATCGCTCAGACATGGGTGCAATGATATCCTTAAGGCGGACTGTGTCAACCTTCTAATTAAGTATCACAAAGAGGCAAGGCATGGAATTTCCTTAGGTAATGAAGAAGATGAGCCACGAATCAAAATGAGCAGTACCCATGCTTTTCAGGTATCTGACAAATCCCCAAGCCTGAGAATCATGGAGGTGAAGTCAAAGACTAGGGGAGGTGGAAGATGTTGCATATGTTTTGACCCATTTCAAATACAGAGTGTATCAGTCATTGTTTTCTTTTGCTGTCATGGTTATCACACAACTTGTCTCACGGATTCGTCCTACACAATTAGTACCAAGAAAGCGATTGAAGTCACTTCCCAAGAGGCAGAAACGTATGACAGCTACAATGGTTATGTGGATGATGCTAGTGATGATGATAATGAAGCCAATTCAGGTTGTCCTCGCTTGCGTTGTATATTGTGTACTACTGCTACTGGTTGA 2847 0.4384 MAPISSENGVEGDDEREEQEEEDEEDDEEEPRLKYQRMGGSVPSLLAADAASCIAVAERMIALGTHAGTVHILDFLGNQVKEFSAHASVVNDLNFDIEGEYIGSCSDDGSVVINSLFTDEKMKFEYHRPMKAIALDPEYARKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWANDAGVKVYDTANEQRVTFIERPRASPRPELLLPHLVWQDDTLLVIGWGTSIKIASIKTNSYKAVNGTFRQVPLSSMTQVDIVASFQTSYFISGIAPFGDALVVLAYIPGEEDGDKDFSSTAPSRQGNGQRPEVRIVTWNNDELSTDALPVHGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYGEAASLCPKLLQGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVSLVALATNPSFHKDLLSTVKSWPSVIYSALPVISAIEPQLSTSSMTDSLKEALAELYVIDGQYEKAFSLYADLMKPEVFDFIDKHNLHDAIREKVVQLMMLDCKRAVPLLIQNRDITSPPEVVKQLIRADNNCDCRYFLHLYLHSLFEVNPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAHEICIKRDLMREQVFILGRMGNSKQALAIIINKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYHKEARHGISLGNEEDEPRIKMSSTHAFQVSDKSPSLRIMEVKSKTRGGGRCCICFDPFQIQSVSVIVFFCCHGYHTTCLTDSSYTISTKKAIEVTSQEAETYDSYNGYVDDASDDDNEANSGCPRLRCILCTTATG* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0930 948 MobiDBLite consensus disorder prediction 11 29 - -
Lja3g0930 948 SMART CLH_2 602 749 IPR000547 GO:0006886|GO:0016192
Lja3g0930 948 SUPERFAMILY WD40 repeat-like 49 256 IPR036322 GO:0005515
Lja3g0930 948 MobiDBLite consensus disorder prediction 1 33 - -
Lja3g0930 948 Pfam Region in Clathrin and VPS 604 745 IPR000547 GO:0006886|GO:0016192
Lja3g0930 948 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 602 749 IPR000547 GO:0006886|GO:0016192
Lja3g0930 948 SUPERFAMILY RING/U-box 856 894 - -
Lja3g0930 948 PANTHER VACUOLAR PROTEIN SORTING VPS41 1 948 IPR045111 GO:0006623
Lja3g0930 948 PIRSF Vps41 4 903 IPR016902 GO:0034058|GO:0046907
Lja3g0930 948 Gene3D - 47 333 IPR015943 GO:0005515
Lja3g0930 948 SMART WD40_4 164 200 IPR001680 GO:0005515
Lja3g0930 948 SMART WD40_4 76 115 IPR001680 GO:0005515
Lja3g0930 948 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 1 948 - -
Lja3g0930 948 Gene3D Tetratricopeptide repeat domain 543 808 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0930 Lja-Chr3 9449760 9459918 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0930 K20184 - gmx:100804340 1741.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0930 3 9449760 9459918 Lja3g0930 3 9449760 9459918 ECH