LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g0929	ATGCAGCCGAACTTGTTTCCATTTGGAAGCGTGCTGGGGAATCCGTTCATTTTCGATGCCGATTTGAGTGACGGAGGAGTTGGAGTTGGAGGAGGAGGAGGGATCGATAGTTCTAGGGTTTTCTTCTTGCTTCCTTTCTTCTTGCTCTCACAGGGAGGAGCAATGGATTTGTCTAAAGTCGGTGAAAAGATCTTGAGCTCCGTCAGGTCCGCCAGATCGCTCGGCTTGCTCCCTCCCGCTTCCGATCGGCCTGAGGTTCCAGCTCGAGCCGCTGCTGCAGCTGCTGTTGCTCGTGCTCTTGCAGGATTACCTCCTCATCAGAGGTATAGTCTTTCATCAAGTTCAGAAGAACTGAGTTCAATATATGGAAGCAGACCTGGCCAAGTAGTGGAGGAACTGGAGAATGAATTTTATGAGGAGGATTTTGATCCTATTAAGCATGTTCTGGAGCACATTCCAGCTGAAGAAAATGAGCTATCTTATTTTGAAAAACAGGCTGCCCTTAGATTGGCACAACTGGATAAAGTAGCAGAGCATTTATCTCGCCATGTTATGGAACATCATGAAGTAATGGTGAAGGGGATGAATTTGGTCAGAGAATTGGAGAAAGACTTGAGAATTGCAAATGTCATCTGTATGAATGGAAGAAGACACTTGACATCATCTATGAATGAGGTTTCACGAGATCTAATTGTGAATTCTTATTCAAAAAAGAAACAAGCTCTTATGGACATGCTTCCTGTCTTGACTGAACTTCAACGTTCGTTGGACATGCAATCAATGCTAGAATCCCTTGTGGAGGAAGGAAATTATTGGAAGGCATTTCAAGTCCTATCAGAGTACTTGCAACTCTTAGACAGTTTGTCAGAGCTTTCAGCAATACAAGAGATGAGTCGTGGTGTGGAGGTTTGGCTAGGAAGAACTTTACAGAAGTTGGATGCTCTTTTATTGGAAGTATGTCAGGAATTTAAGGAAGATGGCTATATTACAGTAATTGATGCGTATGCATTAATAGGGGATACCACTGGTCTTGCTGAGAAGATACAGAGTTTCTTCATGCAAGAAGTTATATCAGAAACACACTCAGTGTTAAAGGCTATTGTGCACGAGGATGAGGAGGGACTTGCGCAAAATAGTAGGTTCACTTACAGTGATCTATGCCTTCAAATACCTGAATCTAAGTTTAGACAGTGCTTATTAAGGACACTGGCTGTTCTATTTGACCTTATGTGTTCATACCATGAAATTATGGATTTTCAGCTAGCGAGGAAGGACTCTGCAGCACAAGCTTCGAATATGTGCAATGAAGACACTTCTTGTAGTCCAGGTGAGGCTCAGGAAGTTGATTCAAATATAGGAGTCTGCAACAATTCTATGTCCACTTCTGGAGATATAATAAAAGGCTCCTCTTCTGGGAAGGAATCTTCGACAATCAGTTCAATCACTGAAACTACTGTAACTGCTGGTTCACCACACAGTGATTCTCACGGTCCAGTTAATGAGGCTGGACAGGAAGAAAATTCAGTATCAAGCATTGAATCCCCATGGTACTATCTTCGCAAAGAAGCCACAACATTTGTTTCCCAGACCCTGCAAAGAGGACGCAAGAATCTGTGGCATCTCACTGCGAGTCGTGTGTCAGTATTGCTTTCTTCTGCTGCATCTTGTTCTGCAAGCATTCATCAATTCTTGAAAAATTATGAAGATCTCAGTGTATTCATTTTGACTGGTGAAGCCTTCTGTGGAATTGAAGCAGTTGAATTCAGGCAGAAGTTGAAGGTTGTTTGTGAAAACTATTTCATAGCTTTTCATCGACAAAATGTACATGCACTAAAAATGGTTTTGGAGAAAGAAACTTGGTTAAAATTACCTCCGGATACTATACAAATTATCAGTTTTGCTGGACTGATTGGTGATGGAGCACCTCTGATTTCTTTATCCAGTGGTAAATCAATGAATGTCAACGCAATCCATTCTGATAAATCAGTAAGCATGGTACGTACCAGTTCTAGGAAGAGTGGGTTCTCTCATTGGATTAAAAATGGAAACCCTTTTCTGCAAAAGTTATCAACCTCCAAAGAAGGCCATGGTCATTCACAACCTAATGGATCAACCTATGGTGAACTTGATGGAGGTTCAACCAACAACATTCATGATGATAAAGTCTCCCCTAGAAAGAATGGTTCCAATCAATTGAATGGTGCCAACTCTGTTTCAGAAGATGAAAATGAGGATCTTCTTGCTGACTTTATTGATGAAGACAGTCAACTTCCAAGTCGGATTTCTAAACCCCATCATTCAAGAAATCATTCTCATGGTAATGATGAAGAGAGTACAACACAAACGGGATCTTCTTTATGTCTTCTAAGGTCTATGGATAAATATGCAAGGCTAATGCAGAAGTTAGAAGTAGTCAATGTTGAATTCTTTAAGGGAATATGCCAGTTGTTTGAAATTTTTTTCTATTCTATATATGAAACATTTGGTCAGCAGAACACTAATTCAAGTGGAAAAAGCTCAACTAACTCTCTTAATTATCGCTTGAGGACAGCCTTATCTAGAATAAATCAAGATTGTGAAGAGTGGATTAAACCTCAGTCGTCTTCACCATCATCTTTAAGTTCTTCATTTGTACATGCAGAGTTCACGCCTATGAACCCTCCCAATAGTAATGTTGGTCACTCATCAGGGACTTCTTTGGGTCTCAAGGAGAGATGTGTGGCTGTTGACACTATATCTCTTGTTGCTCGAATACTGAATAGATCCAAAGCTCATCTCCAATCAATGCTCTTGCAAAGTAATTCAACTGTACTCGAGGATTTCTATGTTCATCTGGTTGATGCTGTGCCAGATCTTACAGAGCATGTTCATCGTACAACAGTGAGACTGCTGCTTCACATTAATGGGTATGTTGATCGTGTTGCCAATTGTAAATGGGAAGTAAAAGAACTTGGGATGGAGCATAATGGGTACGTTGATTTGTTGCTGGGGGAGTTTAAGCACTATAAAACACGACTTGCACATGGTGGAATTCGTAAGGAGATTCAAGACTTACTGTTGGACTATGGGCTTGAAATTGTGGCGGAAGCTCTTGTTGAAGGACTTTCACGGGTGAAGAGATGTAGTGATGAAGGACGAGCTCTCATGTCATTGGATCTGCAGGTTTTGATCAATGGGCTACATCATTTTGTGTCGTTGAATGTGAAGCCCAAGTTGCAAATGGTTGAAACTTTCATTAAGGCTTATTACCTTCCCGAGACGGAATATGTACACTGGGCACGAGCACACCCGGAATACAGTAAAAGCCAGGTTGTTGGACTGATCAACCTTGTTGCTACTATGAAAGGATGGAAGAGGAAAACCAGGTTGGATATATTGGAAAAGATTGAATGA	3393	0.4117	MQPNLFPFGSVLGNPFIFDADLSDGGVGVGGGGGIDSSRVFFLLPFFLLSQGGAMDLSKVGEKILSSVRSARSLGLLPPASDRPEVPARAAAAAAVARALAGLPPHQRYSLSSSSEELSSIYGSRPGQVVEELENEFYEEDFDPIKHVLEHIPAEENELSYFEKQAALRLAQLDKVAEHLSRHVMEHHEVMVKGMNLVRELEKDLRIANVICMNGRRHLTSSMNEVSRDLIVNSYSKKKQALMDMLPVLTELQRSLDMQSMLESLVEEGNYWKAFQVLSEYLQLLDSLSELSAIQEMSRGVEVWLGRTLQKLDALLLEVCQEFKEDGYITVIDAYALIGDTTGLAEKIQSFFMQEVISETHSVLKAIVHEDEEGLAQNSRFTYSDLCLQIPESKFRQCLLRTLAVLFDLMCSYHEIMDFQLARKDSAAQASNMCNEDTSCSPGEAQEVDSNIGVCNNSMSTSGDIIKGSSSGKESSTISSITETTVTAGSPHSDSHGPVNEAGQEENSVSSIESPWYYLRKEATTFVSQTLQRGRKNLWHLTASRVSVLLSSAASCSASIHQFLKNYEDLSVFILTGEAFCGIEAVEFRQKLKVVCENYFIAFHRQNVHALKMVLEKETWLKLPPDTIQIISFAGLIGDGAPLISLSSGKSMNVNAIHSDKSVSMVRTSSRKSGFSHWIKNGNPFLQKLSTSKEGHGHSQPNGSTYGELDGGSTNNIHDDKVSPRKNGSNQLNGANSVSEDENEDLLADFIDEDSQLPSRISKPHHSRNHSHGNDEESTTQTGSSLCLLRSMDKYARLMQKLEVVNVEFFKGICQLFEIFFYSIYETFGQQNTNSSGKSSTNSLNYRLRTALSRINQDCEEWIKPQSSSPSSLSSSFVHAEFTPMNPPNSNVGHSSGTSLGLKERCVAVDTISLVARILNRSKAHLQSMLLQSNSTVLEDFYVHLVDAVPDLTEHVHRTTVRLLLHINGYVDRVANCKWEVKELGMEHNGYVDLLLGEFKHYKTRLAHGGIRKEIQDLLLDYGLEIVAEALVEGLSRVKRCSDEGRALMSLDLQVLINGLHHFVSLNVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVVGLINLVATMKGWKRKTRLDILEKIE*	1131

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g0929	1130	ProSiteProfiles	SCAN box profile.	849	889	IPR003309	-
	Lja3g0929	1130	PANTHER	UNCHARACTERIZED	30	1130	IPR040047	GO:0032456\|GO:0042147\|GO:1990745
	Lja3g0929	1130	MobiDBLite	consensus disorder prediction	465	494	-	-
	Lja3g0929	1130	MobiDBLite	consensus disorder prediction	687	718	-	-
	Lja3g0929	1130	MobiDBLite	consensus disorder prediction	465	508	-	-
	Lja3g0929	1130	MobiDBLite	consensus disorder prediction	757	783	-	-
	Lja3g0929	1130	MobiDBLite	consensus disorder prediction	687	739	-	-
	Lja3g0929	1130	Pfam	Protein of unknown function C-terminus (DUF2451)	900	1130	IPR019514	-
	Lja3g0929	1130	Pfam	Vacuolar-sorting protein 54, of GARP complex	130	419	IPR019515	-
	Lja3g0929	1130	PANTHER	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN-RELATED	30	1130	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g0929	K23288		-	gmx:100803274	1900.18

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja3g0929	3	9431182	9448200	Lja3g0929	3	9431182	9448200	ECH