Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0927 ATGGAAAACCTTCGTCACTTTCTCTCCTTTCTTCTTTTCCTTGGTTTCTTGTTCCATGAAGGAAAGGTTGCTGCAGCTTTCAAGAAAAACCAAGATGGATCAGAGGAATGGGGATACGTTGAAGTCAGACCCAAAGCACACATGTTTTGGTGGCTTTATAAAAGTCCTTACAGAGTGGAAGATCCCAATAAGCCATGGCCTATTGTTCTCTGGCTGCAAGGAGGGCCTGGTGCTTCTGGGGTTGGGATTGGAAATTTTGAAGAGGTTGGTCCTTTGGACACTGGATTGAAGCCAAGGAATTCAACATGGTTGAAGAAAGCAGATCTCTTGTTTGTGGACAATCCTGTTGGAACCGGGTACAGCTTTGTGGAGGACAAGAAGCTCTTTGTGAAAACAGATGTGGAGGCAGCCACTGACTTGACTACATTGCTAATTAAGATATTCAACAGGGATGAAAATCTACAAAAGAGTCCTCTGTTCGTTGTGGCAGAGTCTTATGGTGGGAAATTTGCTGTCACTCTTGGATTATCTGCTTTGAAAGCAATTGAAGATGGGAGATTGAAGCTTAAATTTGGAGGTGTGGCATTAGGAGATAGTTGGATCTCCCCAGAAGATTTTGTGTTTTCATGGGGTCCTCTCCTCAAAGATGTCTCAAGACTTGATGATAATGGATTAGAAAAATCAAACAGTTTAGCTCAGAAGATCAAGCAACAACTAGAGAATGGTAAATTTGTTGATGCAACCAACTCATGGGGTGAACTTGAGTCTGTGATTTCTGCTAGCAGCAACGATGTGGACTTCTACAACTTTTTGTTGGATGCGGGAAGTGATTCAGTAACCTTATCAGTAATGGAGCTGGGGTTATTCAAAGAAGTAGCAATGAAGCGCTACTCCAAGTATCTCACTTCTTCCCTGAGGTCAAAGTCACCATCTCCAGGCGGTGATGAAGATCTTGACCAATTGCTAAACGGTGTCATAAAGAAGAAGTTAAAGATCCCTGAAAATGTCACATGGGGAGGGCAGTCCGATGATGTTTTCATAAATCTTGAAGGTGATTTTATGAAACCAAGAATTGAGGAGGTTGATGAGTTGCTGGCTAAGGGGGTCAGTGTGACTGTTTACAATGGACAAGTTGATTTGATTTGTGCAACCAAGGGTACTGAAGCTTGGCTCAAGAAACTCAAGTGGGAAGGACTTAAAAGTTTCTTGGGGAAAGACAGAACACCCCTCCACTGTGGAAGTAACAAAACGACCAAAGGCTTTGTGAGGTCATACAAAAACCTACACTTTTATTGGATCCTTGGAGCCGGCCATTTTGTACCCACTGATCAGCCATGCGTAGCACTTGACATGGTTGGTGCTATTACACAGTCACCAGCAACATGA 1386 0.4307 MENLRHFLSFLLFLGFLFHEGKVAAAFKKNQDGSEEWGYVEVRPKAHMFWWLYKSPYRVEDPNKPWPIVLWLQGGPGASGVGIGNFEEVGPLDTGLKPRNSTWLKKADLLFVDNPVGTGYSFVEDKKLFVKTDVEAATDLTTLLIKIFNRDENLQKSPLFVVAESYGGKFAVTLGLSALKAIEDGRLKLKFGGVALGDSWISPEDFVFSWGPLLKDVSRLDDNGLEKSNSLAQKIKQQLENGKFVDATNSWGELESVISASSNDVDFYNFLLDAGSDSVTLSVMELGLFKEVAMKRYSKYLTSSLRSKSPSPGGDEDLDQLLNGVIKKKLKIPENVTWGGQSDDVFINLEGDFMKPRIEEVDELLAKGVSVTVYNGQVDLICATKGTEAWLKKLKWEGLKSFLGKDRTPLHCGSNKTTKGFVRSYKNLHFYWILGAGHFVPTDQPCVALDMVGAITQSPAT* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0927 461 Pfam Serine carboxypeptidase 30 454 IPR001563 GO:0004185|GO:0006508
Lja3g0927 461 SUPERFAMILY alpha/beta-Hydrolases 34 458 IPR029058 -
Lja3g0927 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 8 459 IPR001563 GO:0004185|GO:0006508
Lja3g0927 461 ProSitePatterns Serine carboxypeptidases, serine active site. 161 168 IPR018202 GO:0004185
Lja3g0927 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 428 441 IPR001563 GO:0004185|GO:0006508
Lja3g0927 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 122 IPR001563 GO:0004185|GO:0006508
Lja3g0927 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 99 111 IPR001563 GO:0004185|GO:0006508
Lja3g0927 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 147 172 IPR001563 GO:0004185|GO:0006508
Lja3g0927 461 Gene3D alpha/beta hydrolase 19 460 IPR029058 -
Lja3g0927 461 PANTHER CARBOXYPEPTIDASE 8 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0927 Lja-Chr3 9421473 9426752 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0927 K09646 - gmx:100787940 754.207