Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0921 ATGGCTCCAAGGAAAGCTAAGAAGATAGTGGTCAGATCCACCAAGAAAGTTGTGGAGTCAAGTGTGGAAATCACAGTTGGAAGAAGCAGCAAAAGGCTAACTCGAAGTAACTTACAAAATCAGATAGGGGAAGGAGAAGTTGAAGCTCTAGGCCAAGAGAGTGTGAGGGTCATTCCAATTCAAGAAGTGATTCCTCCTCAAGCCAAAGAGGAAGATCATGATGCTAGCACAACCACTTCAACTACTGAAAACAAAGCAGAGCAAGAAAGCACTCAAAATGGTGAACATATCCAAAATCAGAAGGAAGAGAAAACCAGAGACATTGAAGAGGTGAATAAAGCAGAGCAAAACAAAGATATTGCAGAGGTGAAGAAAGCAGAGCAAAACAGAGATATTCTAGAGGCAGAGGAAAACAGAGAGACTGTAGAGGCAGAGCAAAACAGAGGCATTGAGAAAAAACAGGGGAAGAAGGCCAAGAGGACCCGAAAAGGGAATCAAGGAAAAGAGAAAAAGAAGACAAAAAGGGGAAAGAGAAGTGAAGAAGGGTACCAGAGGTATGTGTACAGGGTATTGAAGCAAGTTCACCCTGACATGGGGATTTCTGGTAAAGCCATGACTATTCTGAACAATTTCATGAATGACATGTTTGAGAAGCTGACATATGAGGCTTCTAAGCTGAAGGACTACACTGGACACATGACATTGACATCAAGGGAGATTCAAGGAGCAGTGAGGCTGGTTTTGCCTGGGGAGCTTGGGAAACATGCCATTTCAGAAGGGGTCAAAGCTGTGACCAGATATACATCCTATGCATGA 816 0.4326 MAPRKAKKIVVRSTKKVVESSVEITVGRSSKRLTRSNLQNQIGEGEVEALGQESVRVIPIQEVIPPQAKEEDHDASTTTSTTENKAEQESTQNGEHIQNQKEEKTRDIEEVNKAEQNKDIAEVKKAEQNRDILEAEENRETVEAEQNRGIEKKQGKKAKRTRKGNQGKEKKKTKRGKRSEEGYQRYVYRVLKQVHPDMGISGKAMTILNNFMNDMFEKLTYEASKLKDYTGHMTLTSREIQGAVRLVLPGELGKHAISEGVKAVTRYTSYA* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0921 271 MobiDBLite consensus disorder prediction 62 179 - -
Lja3g0921 271 MobiDBLite consensus disorder prediction 153 173 - -
Lja3g0921 271 PRINTS Histone H2B signature 224 241 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja3g0921 271 PRINTS Histone H2B signature 254 267 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja3g0921 271 PRINTS Histone H2B signature 202 222 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja3g0921 271 PRINTS Histone H2B signature 183 201 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja3g0921 271 PRINTS Histone H2B signature 241 254 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja3g0921 271 Coils Coil 97 145 - -
Lja3g0921 271 MobiDBLite consensus disorder prediction 79 95 - -
Lja3g0921 271 SMART h2b3 173 269 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja3g0921 271 PANTHER HISTONE H2B 1 270 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja3g0921 271 PANTHER HISTONE H2B.2 1 270 - -
Lja3g0921 271 Pfam Core histone H2A/H2B/H3/H4 125 246 IPR007125 GO:0003677
Lja3g0921 271 SUPERFAMILY Histone-fold 155 269 IPR009072 GO:0046982
Lja3g0921 271 Gene3D Histone, subunit A 140 270 IPR009072 GO:0046982
Lja3g0921 271 MobiDBLite consensus disorder prediction 96 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0921 Lja-Chr3 9382611 9383733 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0921 K11252 - lja:Lj3g3v3028970.1 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0921 3 9382611 9383733 Lja3g0921 3 9382611 9383733 ECH