Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0915 ATGGCACTAGCTCACTCTATCACTGCATTAGCAACCACACTCACACTTTCATCATCACCCAGACCAAAACCCCTTCCTGCTTCTTCTTCCTTCACAAACTCACCATTTTCAACCAAACAAGCAAGACCCAGAAGCAGAAGCAACGGTTCCCTAACCCCACCACGCGTTGCAGCACCAACCACCACAATTGAACCAGACCAATCATACCCAGAAGCTGAAAGGGACGAAACTGAGGAAGATTTTGGAGATGATAGCTCGTCCTCGAAGTTTTCATGGAGAGATCACTGGTACCCAGTTTCGCTAATCGAAGATCTGAACCCTCGTGTGCCCACACCGTTTCAGCTTCTGGGTCGTGAAATCGTGCTCTGGTATGATACTGCAAAATCACAATGGGTTGCTTTTGATGATAAGTGTCCTCATAGACTTGCCCCTTTATCTGAAGGGAGGATTGATGAGAGTGGAAACTTGCAGTGTTCTTATCATGGGTGGTCTTTTGATGGGTGTGGATCGTGTGTTGTGATCCCTCAGGCTTCACCTCAAGGACCTGAAGCACGTGCTGTTCGTTCTCCTAAAGCTTGTGTCACCAGGTTTCCTACCTTGGTGTCTCAGGGCTTGCTCTTTGTTTGGCCTGATGAGAATGGTTGGGACAGAGCAAATGCCTCCAAGCCTCCATTGTTGCCAGCTGACTTTGATAAACCAGAGTTCGCTACTGTTAACATTCAGCGTGATCTGTTCTATGGCTATGATACTCTCATGGAGAATGTCTCAGACCCTTCTCACATTGATTTCGCTCATCACAAGGTAACAGGAAGGAGAGATAGAGCCAAGCCTCTTCCATTCAAGATGGATTCTCGTGGTCCATGGGGATTTGCAGGAGCTAATGAAGGGAACCCACAGATCAGTGCCAAATTTGTTGCACCATGTTACTATATGAACAAGATTGAGATTGATACAAAACTCCCAGTAGTTGGTGATCAGAAATGGGTAATATGGATATGTTCCTTCAATGTCCCCATGGCACCTGGTAAGACTCGCTCCATTGTATGCAGTGCTCGAAACTTCTTCCAGTTCTCAGTGCCAGGGCCTGCCTGGTGGCAAGTTGTTCCTAGATGGTATGAACATTGGACCTCAAACCTTGTCTATGACGGAGACATGATTGTCCTTCAAGGTCAAGAGAAGATCTTTCTTTCAGAAACAGAGGAAGGCGGCGACATTAACAAAGTGTACACCAACATCACCTTCACACCAACACAGGCAGACCGCTTTGTCTTGGCATTTCGAAATTGGCTGAGGCGGCATGGCAACGGCCAACCGGAATGGTTTGGCAAGACCAACAAGCAGAAGTTGCCATCAACAGTTCTTTCAAAACGCGAGATGTTGGATAGATTTGAACAGCACACACTTGTGTGTTCATCATGTAAAGGAGCATATGAGGGGTTCCAAACATGGCAGAAGATCCTGATTGGTGCAACAGTTGTGTTTTGTGCAACGTCAGGGATCCCATCAGATACCCAGTTGCGGATACTTTTGGCTGGACTAGGAATTCTCAGTGCAGGCTTAGCTTTTGCCATAAACCAACTCCAAAAGAATTTTGTATTTGTCGATTACGTGCATGCTGACATCGATTAA 1629 0.4647 MALAHSITALATTLTLSSSPRPKPLPASSSFTNSPFSTKQARPRSRSNGSLTPPRVAAPTTTIEPDQSYPEAERDETEEDFGDDSSSSKFSWRDHWYPVSLIEDLNPRVPTPFQLLGREIVLWYDTAKSQWVAFDDKCPHRLAPLSEGRIDESGNLQCSYHGWSFDGCGSCVVIPQASPQGPEARAVRSPKACVTRFPTLVSQGLLFVWPDENGWDRANASKPPLLPADFDKPEFATVNIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKMDSRGPWGFAGANEGNPQISAKFVAPCYYMNKIEIDTKLPVVGDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSVPGPAWWQVVPRWYEHWTSNLVYDGDMIVLQGQEKIFLSETEEGGDINKVYTNITFTPTQADRFVLAFRNWLRRHGNGQPEWFGKTNKQKLPSTVLSKREMLDRFEQHTLVCSSCKGAYEGFQTWQKILIGATVVFCATSGIPSDTQLRILLAGLGILSAGLAFAINQLQKNFVFVDYVHADID* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0915 542 SUPERFAMILY ISP domain 89 216 IPR036922 GO:0051537
Lja3g0915 542 Gene3D - 91 233 IPR036922 GO:0051537
Lja3g0915 542 Gene3D - 234 437 - -
Lja3g0915 542 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 27 542 - -
Lja3g0915 542 SUPERFAMILY Bet v1-like 203 437 - -
Lja3g0915 542 MobiDBLite consensus disorder prediction 12 67 - -
Lja3g0915 542 PANTHER PHEOPHORBIDE A OXYGENASE, CHLOROPLASTIC 27 542 - -
Lja3g0915 542 MobiDBLite consensus disorder prediction 12 89 - -
Lja3g0915 542 Pfam Pheophorbide a oxygenase 304 399 IPR013626 GO:0010277
Lja3g0915 542 Pfam Rieske [2Fe-2S] domain 95 179 IPR017941 GO:0051537
Lja3g0915 542 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 96 208 IPR017941 GO:0051537
Lja3g0915 542 CDD Rieske_RO_Alpha_PaO 77 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0915 Lja-Chr3 9320266 9325869 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0915 K13071 - gmx:100812162 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0915 3 9320266 9325869 Lja3g0915 3 9320266 9325869 ECH