Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0910 ATGCCGCTAGCCATGGCGCCCCACGCGCTCATCTCACTCTCTCCTCACCCACCACTCCTCCGATCATCCTTCTCCGGTGCCTCCCTCAAACTCTCCCCCCACTTCCGAACCTTCTCACCCTCCAAACCCCTCGCCGTCCTCGCCGCCACCAAGAAAGCCGTCGCCGTCCTCAAGGGCACCTCCGCCGTCGAAGGCGTCGTCACCCTCACCCAAGAAGACAACGGACCAACAACTGTGAATGTTAGAATCACTGGTCTCACTCCAGGTCTTCATGGTTTTCACTTACATGAGTATGGTGATACCACAAATGGGTGTATATCAACAGGACCACATTTTAATCCTGACAACAAGACACATGGTGCTCCTGAAGATGAAATCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCCGATGGAGTCGCAGAGGCAACAATAGTGGATAGTCAGATTCCACTCACTGGCCCCAATGCAGTCATTGGGAGAGCCTTAGTGGTTCACGAACTTGAAGATGACCTTGGAAAGGGTGGGCATGAACTTAGTTTGAGCACTGGAAATGCTGGTGGAAGATTAGCATGTGGTGTGGTTGGTTTGACTCCAACATAA 609 0.5255 MPLAMAPHALISLSPHPPLLRSSFSGASLKLSPHFRTFSPSKPLAVLAATKKAVAVLKGTSAVEGVVTLTQEDNGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPDNKTHGAPEDEIRHAGDLGNIVANADGVAEATIVDSQIPLTGPNAVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPT* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0910 202 CDD Cu-Zn_Superoxide_Dismutase 51 194 IPR001424 GO:0006801|GO:0046872
Lja3g0910 202 ProSitePatterns Copper/Zinc superoxide dismutase signature 1. 92 102 IPR018152 -
Lja3g0910 202 Pfam Copper/zinc superoxide dismutase (SODC) 63 197 IPR001424 GO:0006801|GO:0046872
Lja3g0910 202 ProSitePatterns Copper/Zinc superoxide dismutase signature 2. 186 197 IPR018152 -
Lja3g0910 202 PRINTS Cu-Zn-superoxide dismutase family signature 172 198 IPR001424 GO:0006801|GO:0046872
Lja3g0910 202 PRINTS Cu-Zn-superoxide dismutase family signature 92 114 IPR001424 GO:0006801|GO:0046872
Lja3g0910 202 PRINTS Cu-Zn-superoxide dismutase family signature 147 169 IPR001424 GO:0006801|GO:0046872
Lja3g0910 202 PRINTS Cu-Zn-superoxide dismutase family signature 128 137 IPR001424 GO:0006801|GO:0046872
Lja3g0910 202 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 50 200 IPR024134 -
Lja3g0910 202 SUPERFAMILY Cu,Zn superoxide dismutase-like 52 199 IPR036423 GO:0006801|GO:0046872
Lja3g0910 202 Gene3D Superoxide dismutase, copper/zinc binding domain 47 201 IPR036423 GO:0006801|GO:0046872
Lja3g0910 202 PANTHER SUPEROXIDE DISMUTASE [CU-ZN] 1 50 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0910 Lja-Chr3 9263501 9266833 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0910 K04565 - gmx:100815376 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0910 3 9263501 9266833 Lja3g0910 3 9263501 9266833 ECH