Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0900 ATGCCATCATCATCCTCTTTGCTCAAAATGCTTCATCTCTTCTCTCTTCTTGTCCTGTCACTCACCATTTGTTCTTGTGCTCAGGGTCCACCTTCAACTGGCTACTACCTCAGTTCCAAGATTATTCCTGTTAGCTTTAGTCAAGGCTTTAGAAACCTTTGGGGACCTCAGCACCAGAAGCTGGACCAGGGTTCATTGACAATATGGCTTGACTCTAACTCAGGAAGTGGATTCAAGTCACTTCAGTCTTATCGATCTGGATACTTTGGTGCTGCAATTAAGCTTCAACCTGGTTATACTGCAGGAGTCATTACATCTTTATATCTTTCAAACAACCAAGACCACCCGGGAAACCATGATGAAATTGACATTGAGTTCCTTGGTACCACACCGGGGAAGCCATATGTGTTGCAGACAAATGTATACATAAGAGGAAGTGGAGATGGGAACATTGTAGGAAGAGAGATGAAGTTTCACCTTTGGTTTGACCCAACACAAGATTTTCACAACTATGCCATTCTTTGGAAACCCAGTGAGATCATATTTTTTGTGGATGATGTCCCCATAAGAAGGTATCCTAGGAAGAGTGATGCCACATACCCCACAAGGCCAATGTATGTGTATGGATCTATATGGGATGCATCTTCATGGGCAACAGAGGATGGAAAATACAAAGCCAATTATAACTACCAACCTTTCATTGGTAGGTACAAAAACTTCAAATTACAAGGTTGTACCGCTGAAAGCCCTGCCTGGTGCAAACCACCCTCAGCCTCTCCATCTGGCTATGGAAGCCTGAGCTCCCGACAGTTTTCAGCCATGCAATGGGCCCAAAACAACTACATGGTCTATAATTACTGCCATGATCCTAGAAGAGACCACACACTCATCCCAGAGTGCTAG 903 0.4396 MPSSSSLLKMLHLFSLLVLSLTICSCAQGPPSTGYYLSSKIIPVSFSQGFRNLWGPQHQKLDQGSLTIWLDSNSGSGFKSLQSYRSGYFGAAIKLQPGYTAGVITSLYLSNNQDHPGNHDEIDIEFLGTTPGKPYVLQTNVYIRGSGDGNIVGREMKFHLWFDPTQDFHNYAILWKPSEIIFFVDDVPIRRYPRKSDATYPTRPMYVYGSIWDASSWATEDGKYKANYNYQPFIGRYKNFKLQGCTAESPAWCKPPSASPSGYGSLSSRQFSAMQWAQNNYMVYNYCHDPRRDHTLIPEC* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0900 300 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 259 300 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lja3g0900 300 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 37 237 IPR000757 GO:0004553|GO:0005975
Lja3g0900 300 SUPERFAMILY Concanavalin A-like lectins/glucanases 45 300 IPR013320 -
Lja3g0900 300 Gene3D - 26 300 - -
Lja3g0900 300 Pfam Glycosyl hydrolases family 16 47 229 IPR000757 GO:0004553|GO:0005975
Lja3g0900 300 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 13 300 - -
Lja3g0900 300 PIRSF EndGlu_transf 4 300 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lja3g0900 300 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 13 300 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0900 Lja-Chr3 9159702 9162604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0900 14 300 Glycoside Hydrolase AT3G44990 65.636 1.52e-142 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0900 K08235 - gmx:100781528 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0900 3 9159702 9162604 Lja3g0900 3 9159702 9162604 ECH
Lja3g3670 3 72849780 72852439 Lja3g0900 3 9159702 9162604 PCT