Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0879 ATGAACAATTCACAATCTGAAAATCATGATGAAGTAACGGTCGTGGGATTTGAAGTTCCCAAGTCTCCTGATTCCAGTTACAGTAATGTCTATACTGGAAATGGAGATGATGCACGGGATCCACCTATTGCCCCTCCACATTTGCAACACCCTTTACTCAGTTATCCCTCTAGTAGAGGAGACACCTCAGGAACTCTTCCATTGCCTCCAAATGTTATTCTAAATCATCTTTTTATTGAGGATGGGGAGTCCCCAAGATCTGTGGTGGCAGTAGGATTCACCCATCGCTTCCGTTCAAAATTTGTTACAGTCGTGCTCTACAAACCAGTCCAAAGAAGGGGAAGTCCAAGCATTTGA 357 0.437 MNNSQSENHDEVTVVGFEVPKSPDSSYSNVYTGNGDDARDPPIAPPHLQHPLLSYPSSRGDTSGTLPLPPNVILNHLFIEDGESPRSVVAVGFTHRFRSKFVTVVLYKPVQRRGSPSI* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0879 118 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-3 1 116 IPR030067 GO:0009744|GO:0043562
Lja3g0879 118 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 116 IPR043554 -
Lja3g0879 118 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 39 109 IPR006828 GO:0005515
Lja3g0879 118 SMART AMPKBI_2 20 110 IPR006828 GO:0005515
Lja3g0879 118 SUPERFAMILY AMPKBI-like 13 110 IPR037256 -
Lja3g0879 118 Gene3D - 12 110 - -
Lja3g0879 118 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0879 Lja-Chr3 8918796 8921357 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0879 - - lja:Lj3g3v3069060.1 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0879 3 8918796 8921357 Lja3g0879 3 8918796 8921357 ECH