Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0876 ATGGCTTCCACCAACGCTCTCTCCTCCGCCTCCATTCTGCGCTCTCCCAACCACCAGGCGCAGGGTCTCACCAGAAGAGCCAACCAGTCGGCGAGGCTGAATTACAAGAAACAACAAAACAACCGCTTCTCCGTCAAAGCCAACGCTAAGGAAATCGCCTTTGACCAGCACTCTCGCCGCGCCCTCCAGGCTGGCATTGATAAACTCGCTGATGCCGTCGGCCTCACTCTCGGCCCAAGGGGGAGGAATGTTGTGTTGGATGAGTTTGGAAGTCCTAAGGTTGTTAATGATGGGGTCACGATTGCGCGGGCGATTGAGCTACCTGATGCCATGGAGAATGCTGGTGCTGCTTTGATTAGGGAGGTTGCGAGTAGAACTAATGACTCTGCGGGTGATGGGACGACGACTGCTTCAGTTCTTGCTCGGGAAATCATTAAGCTTGGACTTCTTAGTGTGACCTCCGGTGCTAACCCGGTGTCCCTCAAGAGAGGGATTGATAAAACTGTGGCTGCTTTGATTGAGGAGCTCGAGAAGAAGGCTAGGCCTGTCAAAGGTGGAGATGATATCAAAGCTGTTGCTTCTATTTCTGCTGGAAATGATGAGTTGATTGGGCATATGATCGCGGAAGCAATTGGCAAGGTTGGACCTGATGGTGTTTTGTCCATTGAGTCTTCATCCTCGTTTGAGACCACAGTTGAAGTTGAGGAAGGAATGGAGATCGACAGAGGGTATATCTCCCCTCAATTTGTTACAAACCCCGAGAAGTCAATTGTTGAATTTGAGAATGCAAGAGTCTTGATCACAGATCAGAAGATATCGGCTATAAAAGATATTATTCCCCTGTTAGAGAAAACCACTCAATTGAGGGCACCCTTGCTTATAATTGCTGAAGATATCACTGGTGAGGCTTTGGCCACCCTTGTTGTGAACAAGCTACGCGGTATCCTGAATGTTGCTGCCATCAAATCTCCTGGCTTTGGTGAGCGGAGAAAGGCCCTCCTTCAAGACATTGCTATATTGACAGGTGCTGAGTTCCAAGCTAGTGATCTGGGACTACTTGTAGAAAACACCTCAGTTGAACAGCTTGGTTTGGCCCGGAAAGTGACCATCTCCAAGGATTCGACAACTATTATTGCTGATGCAGCATCAAAGGACGAGCTGCAAGCCCGTGTTGCACAATTGAAGAAAGAGTTGTTTGCGACAGACTCAGTTTATGATTCGGAGAAACTGGCTGAGAGGATTGCTAAATTGTCTGGTGGTGTAGCAGTCATCAAGGTCGGCGCTGCTACAGAGACTGAACTCGAGGACCGTAAACTCCGTATTGAGGATGCCAAGAACGCGACTTTTGCTGCCATTGAGGAAGGTATTGTCCCTGGTGGTGGCACTGCACTTGTTCATCTCTCTGCTTTTGTCCCAGCAATCAAGGAGAAGCTTGAAGATCCAGAAGAGAGGCTAGGAGCTGACATTGTGCAAAAGGCACTGGTTGCACCTGCATCATTGATTGCTCAAAATGCTGGAGTAGAGGGGGAAGTTGTTGTGGAGAAAATTAAGAATGGTGAATGGGAGGTTGGTTACAATGCCATGACTGACAAGTATGAGAATTTAGTTGAGGCTGGAGTGATAGACCCTGCTAAGGTAGCAAGGTGTGCTTTGCAGAATGCTGCTTCAGTGGCTGGAATGGTCTTGACCACGCAGGCCATTGTGGTGGAAAAGGCCAAGCCCAAGGCACCTGTGGCTGCTGCTCCACAAGGCCTTACAATCTAA 1764 0.4898 MASTNALSSASILRSPNHQAQGLTRRANQSARLNYKKQQNNRFSVKANAKEIAFDQHSRRALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASRTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVAALIEELEKKARPVKGGDDIKAVASISAGNDELIGHMIAEAIGKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKSIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKSPGFGERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGLARKVTISKDSTTIIADAASKDELQARVAQLKKELFATDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSAFVPAIKEKLEDPEERLGADIVQKALVAPASLIAQNAGVEGEVVVEKIKNGEWEVGYNAMTDKYENLVEAGVIDPAKVARCALQNAASVAGMVLTTQAIVVEKAKPKAPVAAAPQGLTI* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0876 587 ProSitePatterns Chaperonins cpn60 signature. 450 461 IPR018370 GO:0005524|GO:0006457
Lja3g0876 587 PANTHER BNAA04G16190D PROTEIN 1 585 - -
Lja3g0876 587 PRINTS 60kDa chaperonin signature 395 420 IPR001844 GO:0042026|GO:0140662
Lja3g0876 587 PRINTS 60kDa chaperonin signature 443 464 IPR001844 GO:0042026|GO:0140662
Lja3g0876 587 PRINTS 60kDa chaperonin signature 128 155 IPR001844 GO:0042026|GO:0140662
Lja3g0876 587 PRINTS 60kDa chaperonin signature 73 99 IPR001844 GO:0042026|GO:0140662
Lja3g0876 587 PRINTS 60kDa chaperonin signature 313 336 IPR001844 GO:0042026|GO:0140662
Lja3g0876 587 SUPERFAMILY GroEL equatorial domain-like 58 568 IPR027413 -
Lja3g0876 587 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 585 - -
Lja3g0876 587 TIGRFAM GroEL: chaperonin GroL 49 573 IPR001844 GO:0042026|GO:0140662
Lja3g0876 587 Pfam TCP-1/cpn60 chaperonin family 69 571 IPR002423 GO:0005524
Lja3g0876 587 Hamap Chaperonin GroEL [groEL]. 48 585 IPR001844 GO:0042026|GO:0140662
Lja3g0876 587 Gene3D GroEL 237 418 IPR027409 -
Lja3g0876 587 SUPERFAMILY GroEL-intermediate domain like 408 453 IPR027410 -
Lja3g0876 587 Gene3D - 182 455 IPR027410 -
Lja3g0876 587 MobiDBLite consensus disorder prediction 1 27 - -
Lja3g0876 587 SUPERFAMILY GroEL apical domain-like 229 421 IPR027409 -
Lja3g0876 587 SUPERFAMILY GroEL-intermediate domain like 182 247 IPR027410 -
Lja3g0876 587 Gene3D - 52 569 IPR027413 -
Lja3g0876 587 CDD GroEL 50 570 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0876 Lja-Chr3 8863191 8866661 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0876 - - gmx:100775463 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0876 3 8863191 8866661 Lja3g0876 3 8863191 8866661 ECH