Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0853 ATGGCCGGCAAAGCTGGAGCCACTCCGGCGACATACTCGCCGTCTCCGACCACCGATAAGAAGAAAACTTCTCTCATCAAGGAAGATTGGGTCCGACCCGATGGCCGCGGCTTCCACCAGTGCAGACCTGCCTTTTTCAGGACTGGTGCTGTGAATGCTGCATCAGGATCTGCTTATGCTGAGTTTGGAAACACAAAAGTCATTGTATCTGTTTTTGGGCCGAGAGAAAGCAAGAAGGCCATGCTGTACAGTGATGTAGGGCGTCTGAATTGCAATGTCAGCTATACAACGTTTGCAACTCCAGTTCGTGGACAGGGTTCAGACCACAAAGATTACTCTGCGATGCTTGATAAAGCTTTGGGGGGTGCAATAATATTGGAATCTTTCCCCAAGACGACTGTGGATGTTTTTGCACTGGTGCTGGAATCTGGCGGAAGTGATCTCCCAGTTGTCATATCATGTGCTAGCCTTGCCTTGGCAGATGCTGGAATAATGATGTATGATCTTGTAGCCTCAGTTTCTGTGTCATGTCTCAGTAAGAACCTTGTCATTGATCCTATTTCGGAGGAGGAAAACTGCCAAGATGGAAGCATAATGATTACTTGCATGCCTTCTCGCTACGAAATCACCCAACTCACAGTTACTGGGGAATGGTCCACCCCAAAGATTAATGAGGGAATGCAGCTGTGCTTGGATGCTTGTGCAAAGCTTGCCAAGGTTATGAGGTCATGTTTGAAAGAAGCTTCTGATTCACAAGATTAG 762 0.4751 MAGKAGATPATYSPSPTTDKKKTSLIKEDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMLYSDVGRLNCNVSYTTFATPVRGQGSDHKDYSAMLDKALGGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVASVSVSCLSKNLVIDPISEEENCQDGSIMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACAKLAKVMRSCLKEASDSQD* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0853 253 MobiDBLite consensus disorder prediction 1 24 - -
Lja3g0853 253 Pfam 3' exoribonuclease family, domain 2 168 228 IPR015847 -
Lja3g0853 253 PANTHER EXOSOME COMPLEX COMPONENT 9 247 - -
Lja3g0853 253 SUPERFAMILY Ribonuclease PH domain 2-like 166 247 IPR036345 -
Lja3g0853 253 CDD RNase_PH_MTR3 41 247 - -
Lja3g0853 253 PANTHER EXOSOME COMPLEX COMPONENT MTR3 9 247 - -
Lja3g0853 253 Pfam 3' exoribonuclease family, domain 1 40 164 IPR001247 -
Lja3g0853 253 Gene3D - 18 252 IPR027408 -
Lja3g0853 253 SUPERFAMILY Ribosomal protein S5 domain 2-like 26 195 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0853 Lja-Chr3 8672642 8676800 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0853 K12587 - gmx:100816271 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0853 3 8672642 8676800 Lja3g0853 3 8672642 8676800 ECH