Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0841 ATGTACAAGAACCAGCTTCAGGAGCTGGCGCAACGGAGCTGCTTCAACCTCCCTTCCTACACGTGCCTCCGGGAAGGTCCCGATCACGCGCCGCGCTTCAAGGCCACCGTTAACTTCAACGGCGAGACCTTCGAGACCCCTCACTACTGCTCCACGCTTCGCCAGGCGGAGCACTCCGCCGCTGAGGTGGCTCTCAATTCACTCTCCCACCGTGGCCCCTCTCACTCCCTCGCCGCCAAGATCCTCGATGAGACGGGGGTCTACAAGAACCTCTTACAGGAAATTGCGCAAAGGGTAGGGGCTCCATTGCCACAATACACAACATTCAGGTCAGGCCTAGGACACCTACCTGTTTTCACTGGGACTGTAGAATTAGCTGGCATTACATTTACTGGTGAACCTGCCAAGAGTAAGAAACAAGCAGAGAAAAATGCAGCTATGGCAGCATGGTCGACTCTTAAGCAGTTGGCAAAAGAAACTTCAAGCTCTTCAACTGAACCAGAGAACAATGATGAATTAGAACAGATCACCATAGCACGGGCCTTGTTGAACTTCCGTCTGAAGGAAAAGATGACAATGTCAAATCCTAATGCTCCAATTCCATTTCCGAAAAAGTTTCAGTTTCAAAATCCCAGGCCAACTAGTCCTCAACCTCTGCCTGCTGCAACATCAAAGATACTTCCCCTATTTTCCCAAAAGACAGCACCTCGAAGCAGGCATCTAGTAACCGCAGCAGCCAGCAGTGGCAATTCAGCAACACAACGATACTATTCTACACCAGAAAGCAGAGGGCCTTGTCGGCCGAATTTCCCAGCAGTAGGAGCAGCACCTTATGTTCCCATTCGACAAATGCGATCACCTTGCCAAGGGATCGCCCCTCCAGTGACTATAAGGACTGCTGTACCTGTATTCTCCCCACCACCGGCCACAGTGTCCCATCATCAAGTAATGCAGGCTTCTTCTATACGAGTTGCTCCTCCGGTCAATATTCGGCAAGCAGTTCCAGTATACGCTGCTCCCCCAGCTCGGATAGATGAACCTGCTCCAATCCGCAAAGATAAAACTGATGTTAAGGCTGAGAGCATGAAGATTGAAGAACCACCAACTGTAAATGCCCCTAGCCAGGAAGATAAAACTGACACTAAGATGCAGAACATTCCTCCAGAATCTGAGACAATGCAGAGCTTGTTGCAGCTGAGAATTTGA 1206 0.5025 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKATVNFNGETFETPHYCSTLRQAEHSAAEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAGITFTGEPAKSKKQAEKNAAMAAWSTLKQLAKETSSSSTEPENNDELEQITIARALLNFRLKEKMTMSNPNAPIPFPKKFQFQNPRPTSPQPLPAATSKILPLFSQKTAPRSRHLVTAAASSGNSATQRYYSTPESRGPCRPNFPAVGAAPYVPIRQMRSPCQGIAPPVTIRTAVPVFSPPPATVSHHQVMQASSIRVAPPVNIRQAVPVYAAPPARIDEPAPIRKDKTDVKAESMKIEEPPTVNAPSQEDKTDTKMQNIPPESETMQSLLQLRI* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0841 401 MobiDBLite consensus disorder prediction 243 260 - -
Lja3g0841 401 Pfam Double-stranded RNA binding motif 88 152 IPR014720 -
Lja3g0841 401 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Lja3g0841 401 Gene3D - 84 154 - -
Lja3g0841 401 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Lja3g0841 401 SMART DRBM_3 2 69 IPR014720 -
Lja3g0841 401 SMART DRBM_3 88 154 IPR014720 -
Lja3g0841 401 PANTHER - 1 381 - -
Lja3g0841 401 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 381 - -
Lja3g0841 401 MobiDBLite consensus disorder prediction 243 264 - -
Lja3g0841 401 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Lja3g0841 401 SUPERFAMILY dsRNA-binding domain-like 88 158 - -
Lja3g0841 401 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Lja3g0841 401 MobiDBLite consensus disorder prediction 346 363 - -
Lja3g0841 401 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Lja3g0841 401 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Lja3g0841 401 MobiDBLite consensus disorder prediction 372 401 - -
Lja3g0841 401 MobiDBLite consensus disorder prediction 345 401 - -
Lja3g0841 401 Gene3D - 2 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0841 Lja-Chr3 8536106 8540622 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0841 - - gmx:100816445 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0841 3 8536106 8540622 Lja3g0841 3 8536106 8540622 ECH
Lja3g3711 3 73561297 73565594 Lja3g0841 3 8536106 8540622 PCT