Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0813 ATGCATAGGATCAACAAGACAAGCTCCATTTTCTCCACACTTTTCAGAACCAAGTTTCAGTCTCAGCGTGCTGCTTTCTCCTCCTCCTCCTCTTTCCTCTTCGATGAAACCCAGATACAGTTTAAAGAGAGTGTTGCTCAGTTTGCAACTGAGAATATTGCCCCTCATGCTTCAAAAATAGACCACACTAATTATTTCCCTAAGGAGGTTAACTTATGGAAAAGCATGGGGGAGTTTAATCTCCATGGGATTACTGCACCAGAGGAGTATGGAGGGCTAGGTCTAGGTTACTTGTATCATTGTATAGCAATGGAAGAGATTAGCCGTGCTTCAGCATCTGTTGGCCTTTCTTATGGTGCTCATTCTAACCTGTGTCTCAATCAGCTGGTGAGGAATGGAAGCCCTGATCAGAAACAGAAATACTTGCCAAAGCTTATCTCCGGGGACCATGTCGGAGCTTTGGCAATGAGTGAGCCCAATTCTGGTTCTGATGTTGTCAGTATGAAATGCAAGGCTGATCGTGTTGATGGGGGCTATGTACTTAATGGGAACAAGATGTGGTGTACTAATGGGCCAGTTGCTCAAACATTAGTTATCTATGCAAAAACAGACATAACAGCTGGGTCAAAAGGAATCACTGCATTCATCATTGAGAAGGGAATGCCTGGATTCAGTACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACATGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGAAGAAAATGTTCTTGGGAAAGAAGGGAAAGGAGTGTATGTAATGATGTCTGGACTGGATTTAGAAAGGCTTGTTTTGGCTGCTGGTCCCCTGGGTATTATGCAGGCATGTCTTGATGTTGTCCTTCCTTATGTTCGACAAAGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAGGGGAAAGTAGCTGACATGTATACTTCTTTACAGTCCTCAAGGTCTTATGTGTATGCTGTAGCTCGGGACTGTGACAATGGAAAAGTTGATCCAAAGGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCTTTGCAGGCCATACAATGTTTAGGTGGGAATGGCTATGTGAATGAGTATCCAACTGGTCGTCTCCTGAGAGATGCTAAACTCTACGAGATTGGGGCAGGAACTAGTGAGATAAGAAGAATGATTATTGGACGTGAGCTCTTCAAGGAACAATGA 1239 0.4383 MHRINKTSSIFSTLFRTKFQSQRAAFSSSSSFLFDETQIQFKESVAQFATENIAPHASKIDHTNYFPKEVNLWKSMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASASVGLSYGAHSNLCLNQLVRNGSPDQKQKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGPVAQTLVIYAKTDITAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPIGEFQFIQGKVADMYTSLQSSRSYVYAVARDCDNGKVDPKDCAGAILCAAERATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGRELFKEQ* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0813 412 PIRSF PIGM 30 139 - -
Lja3g0813 412 PIRSF PIGM 161 412 - -
Lja3g0813 412 PANTHER 2-METHYLACYL-COA DEHYDROGENASE, MITOCHONDRIAL 1 412 - -
Lja3g0813 412 ProSitePatterns Acyl-CoA dehydrogenases signature 1. 155 167 IPR006089 GO:0003995
Lja3g0813 412 Gene3D - 26 150 IPR037069 GO:0016627|GO:0050660
Lja3g0813 412 Gene3D - 152 264 IPR046373 GO:0016627
Lja3g0813 412 Pfam Acyl-CoA dehydrogenase, middle domain 153 248 IPR006091 GO:0016627
Lja3g0813 412 CDD IVD 34 410 IPR034183 GO:0003995
Lja3g0813 412 ProSitePatterns Acyl-CoA dehydrogenases signature 2. 367 386 IPR006089 GO:0003995
Lja3g0813 412 Gene3D - 265 408 - -
Lja3g0813 412 Pfam Acyl-CoA dehydrogenase, N-terminal domain 36 149 IPR013786 GO:0016627|GO:0050660
Lja3g0813 412 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 258 410 IPR036250 GO:0016627
Lja3g0813 412 PANTHER ACYL-COA DEHYDROGENASE 1 412 - -
Lja3g0813 412 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 31 271 IPR009100 GO:0016627
Lja3g0813 412 Pfam Acyl-CoA dehydrogenase, C-terminal domain 260 408 IPR009075 GO:0016627
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0813 Lja-Chr3 8240083 8245188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0813 35 412 Acyl Lipid Metabolism Gene Families AT3G45300 88.095 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0813 K00253 - gmx:100794259 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0813 3 8240083 8245188 Lja3g0813 3 8240083 8245188 ECH