Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0809 ATGTTCTCTTTTGGTAGAAATTGCTCAAAATATCGTAGCTACTTCAGGAGGAATGGTTCAAGTGAAAATGTATGGCAGAAATTTCCTGAGCCATCTGAGCTCAACAATGTCATTGGGGAAAATTCCCACGAGATGCGTTTCGTTCGTGATGCCCAGAAAGTTAATCACTTTTTGTTCCAAATCACTGCTAGTTATGTTCAGTTACCTGTCCTATTTGCACCCATTTGCTTTAATTCTTATTATTCGACCAAGGCTCCTTCAAGGTCTTACAGAAAAAGAGCTCGTAAGCGGTTTCTAAAATCCTGCAAGCCTACTCTAGATGAAGCTCAATTTCAGTTAGCACAGTCCCAGCTTCTCCCGAGGTTTACTCCTGAAGAACTAAGCAAGGTGATTGCTCTTCAAAGCGACCCTTTAGTTTGCTTAGAATTGTTTCACTGGGCGTCTCAGCAGCCTAGGTTTCGGCACGATGTGTCCACATTTCAAGTCACCATAAAGAAGCTTGGTGCTGCGAAAATGTACCAGGAAATGGATGACGTCGTGAACCAGTTGCTTGCTGTTCCTTTTCTTGGTTCAGAGGCATTGTTCAACATGATTATATATTATTTTACCGAGGCCCGGAAGTTGACTAGAGCCGTCCACATATTTAAGCACATGAAGAGTAGAAGAAATCTGAATTGCAATTTCAGGCCTTCCATTAGAACCTATAATATTCTTTTTGCTGCACTTTTGGGTAGAGGAAACAACTCCTATATAAACCATGTGTATATGGAAACCATTAGATGTCTTTTCAGGCAAATGGTTCATGATGGGATAGAGCCTGATATTTTCTCGTTAAATGCTATGGTAAAAGGTTACGTGCTTTCTCTTCATGTTAATGAAGCATTGAGGATATTTCATCAGATGGGCACGGTTTATGAGTGCCATCCCAACTCTTTAACCTATGATTACTTGATTCATGGATTGTGTGCCCAAGGAAGAACAGAGAACGCCAAAGAGCTGTGTCATGAAATGAAGACCAAAGGTTTCATCCCAAGTAGTAAATCTTATAATTCACTTGTCAATTCTTTGGCACTTGGTGGAGAAGTTGAGGTGGCAGTAAATTATCTGTGGGAGATGACTGAAAACCAGAGGTCAGCTGATTTTATTACATATCGGACTTTACTGGATGAGATATGTAGACGAGGAAAAGTTCAGGAAGCGATGAGGTTTTTGCAGGAGTTGCAAGAAAAGGACCTTGTAGATGGTCATACTTACAGGAAGCTTCTTTATATGCTTGAAGATGAATGGGAACTCAATGAACAGAATTGA 1308 0.4052 MFSFGRNCSKYRSYFRRNGSSENVWQKFPEPSELNNVIGENSHEMRFVRDAQKVNHFLFQITASYVQLPVLFAPICFNSYYSTKAPSRSYRKRARKRFLKSCKPTLDEAQFQLAQSQLLPRFTPEELSKVIALQSDPLVCLELFHWASQQPRFRHDVSTFQVTIKKLGAAKMYQEMDDVVNQLLAVPFLGSEALFNMIIYYFTEARKLTRAVHIFKHMKSRRNLNCNFRPSIRTYNILFAALLGRGNNSYINHVYMETIRCLFRQMVHDGIEPDIFSLNAMVKGYVLSLHVNEALRIFHQMGTVYECHPNSLTYDYLIHGLCAQGRTENAKELCHEMKTKGFIPSSKSYNSLVNSLALGGEVEVAVNYLWEMTENQRSADFITYRTLLDEICRRGKVQEAMRFLQELQEKDLVDGHTYRKLLYMLEDEWELNEQN* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0809 435 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Lja3g0809 435 TIGRFAM PPR: pentatricopeptide repeat domain 382 412 IPR002885 -
Lja3g0809 435 TIGRFAM PPR: pentatricopeptide repeat domain 313 345 IPR002885 -
Lja3g0809 435 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN 23 430 - -
Lja3g0809 435 Gene3D Tetratricopeptide repeat domain 253 339 IPR011990 GO:0005515
Lja3g0809 435 Gene3D Tetratricopeptide repeat domain 340 414 IPR011990 GO:0005515
Lja3g0809 435 Gene3D Tetratricopeptide repeat domain 97 252 IPR011990 GO:0005515
Lja3g0809 435 Pfam PPR repeat 277 301 IPR002885 -
Lja3g0809 435 Pfam PPR repeat family 309 357 IPR002885 -
Lja3g0809 435 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Lja3g0809 435 PANTHER ATPASE EXPRESSION PROTEIN 3 23 430 - -
Lja3g0809 435 Pfam PPR repeat 380 406 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0809 156 422 Glycosyltransferase AT1G05670 21.523 6.60e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0809 - - gmx:102666460 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0809 3 8194198 8196994 Lja3g0809 3 8194198 8196994 ECH