Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0807 ATGCAATCAAACACAGTCATGGAAGGAAGCAAAACCACCCTTTTGCTCATGCTCCTTGTTGTTCTGTGCCATGGAGTGGCCATCACAATAGGAGAAAGGACTTCATCTTCAAAGTCATCAAACAAGTTGTTCTTGATGCAGGATTCCAAGAGTGTGGTTAAGGCTGATGCAGGGGAAATGAGAGTGCTGGAAAGCCATGGTGGTAGGAGATTGGAGAGACTCATGCACATCGGTTTCATCACAATGGAACCAAAGTCCTTGTTCATTCCTCAGTACCTTGACTCCAATTTGGTTATATTTGTCCGTAGAGGGGAAGCAAAGTTGGGGTTCATGTATGGAGATGAACTATCTGAAAGGCGATTGAAGACAGGGGATTTGTATGTAATTCCTGCTGGTTCTGCATTCTATTTGGTGAATTTAGGAGAAGGTCAGAGACTTCACATTATCTGCAGCATTGACACTTCTACTAGCATGGATGACACCTTCCAGTCCTTCTATATTGGAGGAGGAGACAATTCACAGTCAATACTTGCTGGATTCGAGCCTGTGATCCTTGAAACTGCATTTAATGAATCAAGGGAGGAGCTAAGCAAAATCTTCAACAAGAGACTAGAGGGACCAATCGTGTTCGTGGATGATTCTCATGCCCCTAGCCTATGGACCAAATTCCTTAAACTGAAAAAGGAAGACAAAGTGCAATCCATGAAGGAAATGATGCAAGTCCAAGAAGAACACAATCAAGAAGAAGAAGAAGAAGAAAAGCAAACAAGTTGGTCATGGAGGAAGCTCTTAGAAACTGTATTTGGAAAGGAGAACAAGAAGGCAGATTTCAAAGGCACTGCAGATTCCCCTGACTCTTATAACCTCTATGATAAAAATCCTGATTTCAGAAACGATTATGGTTGGAGCAGTGCAATTGATGGAGCAGATTACCCTCCACTCAAAACAGTTGACACTGGTGTTTTCCATGTCAATCTCACAGCTGGATCCATGATGGTACCCCACTTGAATCCAAGGGCAATGGAGTATGGCATAGTGCTGAGAGGCTATGGCAGAATTCAGATAGTGTTTCCAAACGGAAGCAATGCAATGGACACTGAAATCAAAGAAGGGGACGTGTTCTTTGTTCCAAGGTACTTCCCTTTCTGTCAAATAGCATCAAGGAGTGGCCCTTTAGAGTTCTTTGGGTTCAGCACCTCTGCCAGGAAGAACAAGCCACAATTTCTGGTTGGTTCTGTGTCCCTTCTGAGGACCATGATGGGGCCTGAGCTCGCCGCCACTTTTGGGGTCCGCGAAGACACTCTGCGGCGTGTGGTGGATGCTCAGCGCGAGTATGTGATTGTGCCTTCAACATGGGCTGCACCAGGAGATGAAGGGGAGAAGGAGGAGGAAGAGGACAGTGTTAAGGTGAAGTTGCAGCAAAAGGGTATCCAAGGGTTTGATAATGGTGAGGTTTTGGGTGTTTTTGAATAG 1473 0.4501 MQSNTVMEGSKTTLLLMLLVVLCHGVAITIGERTSSSKSSNKLFLMQDSKSVVKADAGEMRVLESHGGRRLERLMHIGFITMEPKSLFIPQYLDSNLVIFVRRGEAKLGFMYGDELSERRLKTGDLYVIPAGSAFYLVNLGEGQRLHIICSIDTSTSMDDTFQSFYIGGGDNSQSILAGFEPVILETAFNESREELSKIFNKRLEGPIVFVDDSHAPSLWTKFLKLKKEDKVQSMKEMMQVQEEHNQEEEEEEKQTSWSWRKLLETVFGKENKKADFKGTADSPDSYNLYDKNPDFRNDYGWSSAIDGADYPPLKTVDTGVFHVNLTAGSMMVPHLNPRAMEYGIVLRGYGRIQIVFPNGSNAMDTEIKEGDVFFVPRYFPFCQIASRSGPLEFFGFSTSARKNKPQFLVGSVSLLRTMMGPELAATFGVREDTLRRVVDAQREYVIVPSTWAAPGDEGEKEEEEDSVKVKLQQKGIQGFDNGEVLGVFE* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0807 490 SMART Cupin_1_3 44 197 IPR006045 -
Lja3g0807 490 SMART Cupin_1_3 287 436 IPR006045 -
Lja3g0807 490 Gene3D Jelly Rolls 34 255 IPR014710 -
Lja3g0807 490 PANTHER OS03G0336100 PROTEIN-RELATED 11 458 - -
Lja3g0807 490 Pfam Cupin 52 192 IPR006045 -
Lja3g0807 490 Pfam Cupin 287 433 IPR006045 -
Lja3g0807 490 CDD cupin_7S_vicilin-like_N 52 219 - -
Lja3g0807 490 PANTHER OS03G0336100 PROTEIN 11 458 - -
Lja3g0807 490 SUPERFAMILY RmlC-like cupins 14 445 IPR011051 -
Lja3g0807 490 CDD cupin_7S_vicilin-like_C 294 444 - -
Lja3g0807 490 Coils Coil 231 255 - -
Lja3g0807 490 Gene3D Jelly Rolls 279 451 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0807 Lja-Chr3 8185086 8189334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0807 40 457 Miscellaneous Gene Families AT2G18540 30.485 6.47e-45 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0807 - - gmx:547942 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0807 3 8185086 8189334 Lja3g0807 3 8185086 8189334 ECH