Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0793 ATGTGGGGCCTGATACCCGCGAAACGGGAAAATCACGATTTGGGCCAACAAACACAACAGAAACCCAACGGTGACTCCGCCGAAGCTAAACACTCTGTGATGGCGGCGTCACGAATCATAGCCCATCTTCCACCGCATCCCCACCGTGCCGTCCCCCACTCTCCGCCGCTCGAGCACTCACCACCGTCACTCAACTTCAAACCCCACCCAAATCGACACCGTAACATCGCCATTCGCGCTTCCCTTCGTGGCCACAAGGAGAACGATCTCAATCTGCGAACCACCCCCGATGATGTACCTGGCGACGCCGTTTCCAAAGATCCCCTCGTTCTTCCGCGGCCTTTGTCGTCAAACCAGTTCTCTGCTTCAGTTTCCGATAGTTCCAGCCTCCGTGTTGCATATCAGGGGGTTCGTGGCGCTTACAGTGAGTCGGCGGCCCAGAAAGCTTACCCGAATTGTGAAGCTGTGCCTTGTGAACAGTTTGATACTGCATTTGAGGCTGTTGAAAGGTGGCTTGTGGACAGAGCAGTTTTGCCAATTGAGAATTCTTTAGGAGGGAGCATCCACAGAAATTATGACCTTTTACTACGACACAGATTACATATAGTAGGAGAAGTAAAATATGCAGTCCATCATTGCTTGATGGCCAACCATGGTGTTAAACTTGAGGACTTGAATCGAGTTCTAAGTCATCAACAGGCTCTTGCACAATGTGAGAACACACTGACAAAGTTGGGCTTGGTAAGAGAAGCGGTTGACGACACAGCTGGTGCTGCAAAGCATATTGCCTTCCACAAAATACAAGATGCAGGAGCAGTTGCTAGCTCTGCTGCTGCAGAGATCTATGGCTTGAATATACTTGCTCAAGACATTCAGGATGATAGCGATAACGTCACCCGATTTTTAATGTTAGCCCGGGAACCTATAATTCCAGGAACAGATAGGCCATTTAAGACAAGCATAGTTTTTTCTTTAGAAGAGGGTCCTGGGATGCTTTTCAAGGCCCTTGCCGTTTTTGCTTTGCGTCAAATTAATCTTACAAAGATTGAAAGTCGTCCTTTGCGGAAGCAGCCTCTGCGAGCATCTGATGATAACGGCAATGGATCCAAGTACTTTGATTATCTTTTTTATGTTGATTTTGATGCGTCAATGGCTGATCAGAGTGCACAAAATGCCCTAAGGCATCTCAAGGAATTTGCCACATTCTTGCGAGTGCTAGGAAGTTATCCTTTGGACACGAGCATGGCGTAA 1251 0.4812 MWGLIPAKRENHDLGQQTQQKPNGDSAEAKHSVMAASRIIAHLPPHPHRAVPHSPPLEHSPPSLNFKPHPNRHRNIAIRASLRGHKENDLNLRTTPDDVPGDAVSKDPLVLPRPLSSNQFSASVSDSSSLRVAYQGVRGAYSESAAQKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKYAVHHCLMANHGVKLEDLNRVLSHQQALAQCENTLTKLGLVREAVDDTAGAAKHIAFHKIQDAGAVASSAAAEIYGLNILAQDIQDDSDNVTRFLMLAREPIIPGTDRPFKTSIVFSLEEGPGMLFKALAVFALRQINLTKIESRPLRKQPLRASDDNGNGSKYFDYLFYVDFDASMADQSAQNALRHLKEFATFLRVLGSYPLDTSMA* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0793 416 MobiDBLite consensus disorder prediction 1 30 - -
Lja3g0793 416 MobiDBLite consensus disorder prediction 83 103 - -
Lja3g0793 416 Pfam Prephenate dehydratase 132 308 IPR001086 GO:0004664|GO:0009094
Lja3g0793 416 Gene3D - 215 294 - -
Lja3g0793 416 SUPERFAMILY ACT-like 301 411 IPR045865 -
Lja3g0793 416 ProSitePatterns Prephenate dehydratase signature 1. 282 304 IPR018528 GO:0004664|GO:0009094
Lja3g0793 416 CDD PBP2_Ct-PDT_like 131 308 - -
Lja3g0793 416 CDD ACT_CM-PDT 318 410 - -
Lja3g0793 416 MobiDBLite consensus disorder prediction 12 26 - -
Lja3g0793 416 Gene3D - 125 214 - -
Lja3g0793 416 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 69 415 - -
Lja3g0793 416 MobiDBLite consensus disorder prediction 48 63 - -
Lja3g0793 416 Gene3D - 313 413 - -
Lja3g0793 416 MobiDBLite consensus disorder prediction 45 70 - -
Lja3g0793 416 PANTHER AROGENATE DEHYDRATASE 69 415 - -
Lja3g0793 416 SUPERFAMILY Periplasmic binding protein-like II 131 312 - -
Lja3g0793 416 ProSitePatterns Prephenate dehydratase signature 2. 346 353 IPR018528 GO:0004664|GO:0009094
Lja3g0793 416 ProSiteProfiles ACT domain profile. 320 410 IPR002912 -
Lja3g0793 416 ProSiteProfiles Prephenate dehydratase domain profile. 131 306 IPR001086 GO:0004664|GO:0009094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0793 Lja-Chr3 8027477 8031997 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0793 K05359 - gmx:100787387 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0793 3 8027477 8031997 Lja3g0793 3 8027477 8031997 ECH