Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0786 ATGTGTGTTTTTTGGTTGGACCAATTTTTATTCAGGGCAATCATGAGTGATGAAGGAGAAAGGACTTGTCCTCTCTGTGCTGAAGAGATGGATTTGACAGATCAGCAGCTGAAGCCTTGCAAATGTGGTTATGAGATCTGTGTCTGGTGTTGGCACCACATAATGGACATGGCTGAGAAGGATGACACTGAGGGGCGATGCCCAGCGTGTCGTTCTCCTTATGATAAGAAAAAGATAGTTGGGATGGCTGCAACCTGTGAGAGATTGGTGAGTGAAATTCATATGGAGAAAAAGATGAAGAATCAAAAAAAGTCTAAATCTTCTGATGGAAGGAAGCAACTTAGCAGTGTGAGAGTGATTCAGCGTAACCTTGTTTACATAGTAGGATTGCCTCTCAATCTGGCAGATGAAGATCTTCTCCAGCGGCGAGAGTACTTTGCTCAGTATGGGAAGGTCTTAAAAGTGTCGATGTCTCGGACAGCAGCTGGTGTCATTCAACAGTTTCCAAATGATACTTGCAGTGTATATATTACTTATTCAAAGGAAGAGGAAGCAATTCGTTGTATTCAAAATGTACATGGATTTATTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGGAATGCGCCTTGCAGCAACCCTGATTGTCTATATCTGCATGAGATTGGCTCTCAAGAAGATAGTTTTTCAAAAGATGAAATAATTTCAGCTTACACTAGAAGTCGAGTTCAACAAATCACTGGGCACGTAAACAATCTGATACGTCGATCAGGGAATGTATTACCTCCTCCAATAGACGATTGCACCAATAATTCATCAGGAAAGCCTATTCTGAAAAGTGCTTCAAGTAACTGTAGTAGCACTGTACGAGATTCACCTCCGAATGGAATCTATGGGAGAAATGTAGCTCTTCCTGCTAGTGCGGCATGGGGTACCCAGCCTACAAATTGTGCGCCACCTGTTGGAGGTCAATCATATCCAAATGGGCCGTCCATGCCAAAACCTGATACAGTTAGCAGCACACTAGCCTTTTCCACAGCTGTCTCGGGCACAATTCAGGCTTCTGCATTGCATTCTGACATTACAAGGAGGCCAGCATCAAGTGATGGGAGTCATAGTACAATACCTAGAGTGAAAAGTGAATTGTTGCAGCCTGTTAAACAATACAATAGCATGGGCAGTCTGAGTAGTGGAGGTGAAAAAACTTCAGCTTCTGATGTTTCTCCCGTGCCTGTTAGTTATAACGGCCAGTCTTCACCACCATCGTCTCGAGATAGTGATAGAGGCAGTTGTACTATAGCAAATACAATAAATTCTACTAACATTACTGGACAGTCTTTTAACTCTGGTCCTGAGGAAGCAATAACTGCTACCAATGAAGAGATTCAGAATTTGTCAAGTCAGTTGTCTTCAATTGACATTGATAGAAATACTGCAAATGAACACTATGGTGTAGCCAAACCTAGTAGCCCGCCTACTGACTATGTCATGACTAATTCTCAAATTCAAGGATCACAACACGATGTTGGTAGATATAAAGATGCAATAATTACTAATTTGGCCGTTGAAACTTCTACATCAGATAATGGGGTTTGTAATTCAAGGGAACAATCTGAGGAGAGATTGGATTCTTCTCAAACTCAAGTTGTACTAGATACTTTTGAATTGGAAGATGATATATCATTTTTTGATAATCAAAGACTCAAGGATCCGGAAGTTTTTTGTGGTTCTTACTTGCCAAAGGCGACAAGTTTCCTACAGGTATCAAGCCATTCTAGCCCTCGTCCAATGCAGTTTGGTGAACCTGGTTCTGCTGTGGATGCTGGTTCTCTATCTTCTGATGATAGATTTCAGGGTGAATCTATTCTACATGGGTCTAGCTTATTATGTAACGGCTACCCAGAAAAGCTGGTCAGTAGCAGCTCTTATGGTTTGCTGCATGATGGAAGAAATGGGGAAAGCATTGGAAGATTAGTTGGTGAAGCAGTTAATACTGGGTGTGATACTGCAATTGACAAGGGGGAAAGTAGTATAATTTCAAATATTCTGTCCATGGATTTTGATTCCTGGGATGACTCACTAACATCACCTTCTAATTTAGCCAAGTTGTTGGGTGACAATACTGATAGCCAGTCTTTAAAAAGATCTAGTTCTTGGAAAGTTCAAACCAACGATCAGTCAAGGTTCTCTTTTGCAAGGCAGGAGGAATCCAAATTCCGAACTTTTGATGTACATCCGTCTTATGATGTCAGCCAGCAGCAGCCAAGAAGCCACACACTCATCCAGAATTTTGCAGAAAGAGACTTGTATACGCACAAGTTGGGCATTGCAAATGGCTTTCCTACCAGTAACTTTGGAGAAGCTGAAAATATAGGCAGTGTTCATTCCATTGCTTCTTCTAATAAGCTTTCTGCCATTTCAAGAGCACAAGTTTCAGCTCCACCAGGATTTTCAGTTCCAAGCAGGCCTCCACCTCCTGGCTTTTCTTCTCATGAGAGAATGGAGCAGGCTTTTGATTCCATAACTGGGAATTCATTACTTGACCATTCCTCCTTGTTGAGAAATTCATACCAGACATCATCTGCTGGAAACATTGGTGGTGTAGGGGACCTTGAATTTATGGATCCTGCTATTTTAGCAGTTGGCAAGGGGAGACTTCAAGGTGCACAAAACAGCCAAATGCTATCAACATTTATTCCACAATCAAATTACTTAGAAAACGAGGTCAGATTACAATTATTGATGCAAAGATCTATCTCCCAGCAGCAAAACCTTAGATATTCTGATATTGGGAATTCTTTTTCTCAACATGGTGATTCTTATGGTATTTCTTCGAGGTTGGATCAATCACAAGTCAATAATATAGCTCCATTCCAACACCTGTCCCTGCAGCAGTCCACAAATTCAATCATGTCAAATGGACAATGGAATGGGTGGAATGAGGTGCAGAGTGGGAGTGGTCTGGGTGTGGCTGATCTTTTGAGGAATGAAAGACTTGGATTTAACAAGTTATACTCGGGATATGACGATTCAAAATATCGTCTGCCAAATTCTGGTGATCTTTATCATAGAACATTTGGGATGTGA 3117 0.4139 MCVFWLDQFLFRAIMSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYDKKKIVGMAATCERLVSEIHMEKKMKNQKKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVHGFILEGRPLRACFGTTKYCHAWLRNAPCSNPDCLYLHEIGSQEDSFSKDEIISAYTRSRVQQITGHVNNLIRRSGNVLPPPIDDCTNNSSGKPILKSASSNCSSTVRDSPPNGIYGRNVALPASAAWGTQPTNCAPPVGGQSYPNGPSMPKPDTVSSTLAFSTAVSGTIQASALHSDITRRPASSDGSHSTIPRVKSELLQPVKQYNSMGSLSSGGEKTSASDVSPVPVSYNGQSSPPSSRDSDRGSCTIANTINSTNITGQSFNSGPEEAITATNEEIQNLSSQLSSIDIDRNTANEHYGVAKPSSPPTDYVMTNSQIQGSQHDVGRYKDAIITNLAVETSTSDNGVCNSREQSEERLDSSQTQVVLDTFELEDDISFFDNQRLKDPEVFCGSYLPKATSFLQVSSHSSPRPMQFGEPGSAVDAGSLSSDDRFQGESILHGSSLLCNGYPEKLVSSSSYGLLHDGRNGESIGRLVGEAVNTGCDTAIDKGESSIISNILSMDFDSWDDSLTSPSNLAKLLGDNTDSQSLKRSSSWKVQTNDQSRFSFARQEESKFRTFDVHPSYDVSQQQPRSHTLIQNFAERDLYTHKLGIANGFPTSNFGEAENIGSVHSIASSNKLSAISRAQVSAPPGFSVPSRPPPPGFSSHERMEQAFDSITGNSLLDHSSLLRNSYQTSSAGNIGGVGDLEFMDPAILAVGKGRLQGAQNSQMLSTFIPQSNYLENEVRLQLLMQRSISQQQNLRYSDIGNSFSQHGDSYGISSRLDQSQVNNIAPFQHLSLQQSTNSIMSNGQWNGWNEVQSGSGLGVADLLRNERLGFNKLYSGYDDSKYRLPNSGDLYHRTFGM* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0786 1038 ProSiteProfiles Zinc finger RING-type profile. 23 71 IPR001841 -
Lja3g0786 1038 Gene3D - 124 205 IPR012677 -
Lja3g0786 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 91 IPR013083 -
Lja3g0786 1038 SMART rrm2_1 124 205 IPR003954 GO:0003676
Lja3g0786 1038 SUPERFAMILY RING/U-box 14 81 - -
Lja3g0786 1038 MobiDBLite consensus disorder prediction 366 444 - -
Lja3g0786 1038 CDD RRM_CNOT4 118 217 IPR034261 -
Lja3g0786 1038 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 209 IPR000504 GO:0003723
Lja3g0786 1038 SMART rrm1_1 124 205 IPR000504 GO:0003723
Lja3g0786 1038 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 10 1038 IPR039780 GO:0004842|GO:0030014
Lja3g0786 1038 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 203 IPR000504 GO:0003723
Lja3g0786 1038 Pfam RING/Ubox like zinc-binding domain 23 75 - -
Lja3g0786 1038 SUPERFAMILY RNA-binding domain, RBD 117 203 IPR035979 GO:0003676
Lja3g0786 1038 MobiDBLite consensus disorder prediction 329 348 - -
Lja3g0786 1038 CDD mRING-HC-C4C4_CNOT4 23 72 IPR039515 -
Lja3g0786 1038 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 10 1038 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0786 Lja-Chr3 7970199 7977314 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0786 K10643 - gmx:100801880 1540.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0786 3 7970199 7977314 Lja3g0786 3 7970199 7977314 ECH