Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0758 ATGATCCTTCACAGAGCCAAAGCGATCAACCCAAATCCCTTGTTCCACCATGCTAATTCTCAAGCTCTATTCCACACCCGTGAACGATCTCAAAGACCAAATTCAAAGCATCGCAAGCGCATTCCATTCATCACCCAAATCAAAGACATTGATGACCCAGATGAAGCTCTGTCCCTATTTCACCATTACAAGGAACAGGGTTGCAGACACTACTACCCTTCCTACGCTGCATTGCTCTACAAGCTTGCTCGTTCAAGAAGATTCGATGCCGTCGAAAGCATTCTCAATCACATGAGAGACAGTGATTTGCACTGTAACGAGAGCGTTTTCATTGCTTTGTTTCAACACTATGGCCCTGAGAAAGCCCTTGAGCTTTTCCGCAGAATGCCCCAGTTCAATTGTGTTCGTACATTGCAGTCTTTCAATGCGCTTCTCAATGTTCTGGTTGATAACGACCGGTTTGGCGAGGCCGGTGAGGCTTTCGGTCGAGTCTACGAGATGGGTTTTCGTCCGAATACGGTTACGTTCAATATAATGATCAAGGGGTGGTTGGGGAAAGGTGAGTGGGGTAAAGCATGTGAGGTGTTTGATGAAATGCTTGAGAAGAGAGTGCAGCCTAGTGTTGTGACTTATAATAGTCTCATTGGGTTTTTGTCTAGAAAGGGTGATTTGGATAAAGCAATGGCATTGCTTGAGGATATGAATCGCAAAGGAAAACGCGCTAATGAGGTGACTTATGCATTGTTGATGGAAGGCTTGTGCTCCGTGGAAAAGTATGAGGAGGCTAAGAAGTTAATGTTTGATATGGCGTATCGCGGGTGTAAACCTCAGCTGGTTAATTTTTCTGTTTTGATGAATGATCTTGGAAGGAGAGGGAAGATTGAAGAGGCCAAGGCTTTGATAAATGAGATGAAAAAAAGGAGGCTTAAACCGGATGTTGTGACGTACAATGTGTTGATAAATTATCTTTGCAAGGAGGGTAAGACTGAGGAAGCTTACAAGGTCTTAACTGAGATGCAGATTAGGGGTACTGAGCCAAATGCCGCTACATACAGGATGATGGTCGATGGTTTATGCAGGATTGGGGATTTTGAGGTGGGTCTGAATGTTTTGAGTGCAATGCTAGCAAGTAGACATTGTCCGCGTTCCGAAACATTTAATAGTTTGGTTGTTGGCTTGTTGAACTCTGGGAATATTGATGGTGCCTGCTTTGTTTTGGAAGAGATGGGGAAGAGAAAGGTGGAATTTGACTTGGTGAACTGGGAAACTATAGTAAAGTATGTTTGCAGTGAGAACAAGGGTGCAAGTGGGCTCATGACTGTACTTAATCCTACATGA 1338 0.4402 MILHRAKAINPNPLFHHANSQALFHTRERSQRPNSKHRKRIPFITQIKDIDDPDEALSLFHHYKEQGCRHYYPSYAALLYKLARSRRFDAVESILNHMRDSDLHCNESVFIALFQHYGPEKALELFRRMPQFNCVRTLQSFNALLNVLVDNDRFGEAGEAFGRVYEMGFRPNTVTFNIMIKGWLGKGEWGKACEVFDEMLEKRVQPSVVTYNSLIGFLSRKGDLDKAMALLEDMNRKGKRANEVTYALLMEGLCSVEKYEEAKKLMFDMAYRGCKPQLVNFSVLMNDLGRRGKIEEAKALINEMKKRRLKPDVVTYNVLINYLCKEGKTEEAYKVLTEMQIRGTEPNAATYRMMVDGLCRIGDFEVGLNVLSAMLASRHCPRSETFNSLVVGLLNSGNIDGACFVLEEMGKRKVEFDLVNWETIVKYVCSENKGASGLMTVLNPT* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0758 445 SUPERFAMILY TPR-like 185 340 IPR011990 GO:0005515
Lja3g0758 445 Gene3D Tetratricopeptide repeat domain 117 239 IPR011990 GO:0005515
Lja3g0758 445 Pfam PPR repeat 115 134 IPR002885 -
Lja3g0758 445 Pfam PPR repeat 385 413 IPR002885 -
Lja3g0758 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Lja3g0758 445 Pfam PPR repeat family 171 215 IPR002885 -
Lja3g0758 445 Pfam PPR repeat family 242 288 IPR002885 -
Lja3g0758 445 Pfam PPR repeat family 311 360 IPR002885 -
Lja3g0758 445 Gene3D Tetratricopeptide repeat domain 378 440 IPR011990 GO:0005515
Lja3g0758 445 Gene3D Tetratricopeptide repeat domain 305 377 IPR011990 GO:0005515
Lja3g0758 445 Gene3D Tetratricopeptide repeat domain 240 304 IPR011990 GO:0005515
Lja3g0758 445 PANTHER OS05G0548600 PROTEIN 24 440 - -
Lja3g0758 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Lja3g0758 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Lja3g0758 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Lja3g0758 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Lja3g0758 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 171 IPR002885 -
Lja3g0758 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Lja3g0758 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Lja3g0758 445 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 24 440 - -
Lja3g0758 445 Gene3D Tetratricopeptide repeat domain 48 116 IPR011990 GO:0005515
Lja3g0758 445 TIGRFAM PPR: pentatricopeptide repeat domain 350 381 IPR002885 -
Lja3g0758 445 TIGRFAM PPR: pentatricopeptide repeat domain 174 207 IPR002885 -
Lja3g0758 445 TIGRFAM PPR: pentatricopeptide repeat domain 281 313 IPR002885 -
Lja3g0758 445 TIGRFAM PPR: pentatricopeptide repeat domain 314 348 IPR002885 -
Lja3g0758 445 TIGRFAM PPR: pentatricopeptide repeat domain 385 417 IPR002885 -
Lja3g0758 445 TIGRFAM PPR: pentatricopeptide repeat domain 74 106 IPR002885 -
Lja3g0758 445 TIGRFAM PPR: pentatricopeptide repeat domain 209 239 IPR002885 -
Lja3g0758 445 TIGRFAM PPR: pentatricopeptide repeat domain 244 276 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0758 Lja-Chr3 7660910 7662586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0758 58 438 Miscellaneous Gene Families AT4G11690 25.445 2.99e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0758 - - gmx:100776556 722.62