Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0738 ATGGCACCCAAGGCAGACAAGAAGCCCGCGGAGGAGAAGAAGTCGACGGTGGCCGAGAAGGCTCCCCCGGCGGAGAAGAAACCCAAGGCCGGGAAGAAGCTTCCCAAGGAGGGCGCAGCCGCTGCCGGAGACAAGAAGAAGAAGAGAAGCAAGAAGAGCGTGGAGACCTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCACCCAGACATCGGTATCTCCAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAATCTTCCAGGCTCGCTCGCTACAACAAGAAACCCACCATCACTTCCAGGGAAATCCAGACCGCGGTCAGGCTTGTGCTGCCCGGAGAGTTGGCTAAGCACGCTGTGTCTGAGGGGACCAAGGCGGTGACGAAGTTCACAAGTTCTTGA 435 0.5655 MAPKADKKPAEEKKSTVAEKAPPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0738 144 PANTHER HISTONE H2B.1-RELATED 4 144 - -
Lja3g0738 144 SMART h2b3 47 143 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja3g0738 144 PRINTS Histone H2B signature 115 128 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja3g0738 144 PRINTS Histone H2B signature 57 75 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja3g0738 144 PRINTS Histone H2B signature 76 96 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja3g0738 144 PRINTS Histone H2B signature 128 141 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja3g0738 144 PRINTS Histone H2B signature 98 115 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja3g0738 144 SUPERFAMILY Histone-fold 28 144 IPR009072 GO:0046982
Lja3g0738 144 Pfam Core histone H2A/H2B/H3/H4 6 120 IPR007125 GO:0003677
Lja3g0738 144 MobiDBLite consensus disorder prediction 1 53 - -
Lja3g0738 144 ProSitePatterns Histone H2B signature. 112 134 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja3g0738 144 Gene3D Histone, subunit A 17 144 IPR009072 GO:0046982
Lja3g0738 144 PANTHER HISTONE H2B 4 144 IPR000558 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0738 Lja-Chr3 7483651 7492460 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0738 K11252 - oeu:111393959 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0738 3 7483651 7492460 Lja3g0738 3 7483651 7492460 ECH