Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0731 ATGGCTTCATCACAGGCCAGCCTTCTCCTTCAAAAGCAGCTCAAAGATCTTTGCAAACACCCCGTCGATGGCTTCTCTGCCGGTTTGGTCGACGAAACCAACATCTTTGAATGGAGCGTCACCATTATTGGACCCCCAGATACCCTTTATGAGGGGGGATTTTTCAATGCCATCATGAGTTTTCCGTCGAATTACCCGAATAGTCCTCCATCAGTGAAATTCACCTCAGAGATATGGCACCCCAATGTATATACTGATGGCCGGGTTTGCATATCAATCCTTCATCCTCCTGGTGATGATCCAAATGGTTACGAGCTTGCTAGTGAGCGCTGGACGCCTGTTCATACAGTAGAGAGTATAGTATTGAGTATCATATCCATGCTTTCCAGTCCTAATGATGAATCTCCTGCCAATGTTGAAGCTGCGAAAGAGTGGAGAGACAGAAGAGATGATTTCAAGAAAAAGGTTAGCAGATGTGTAAGGAGATCACAAGAAATGTTGTGA 504 0.4524 MASSQASLLLQKQLKDLCKHPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYTDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRSQEML* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0731 167 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 4 167 - -
Lja3g0731 167 SMART ubc_7 8 165 - -
Lja3g0731 167 CDD UBCc 18 160 IPR000608 -
Lja3g0731 167 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 79 94 IPR023313 -
Lja3g0731 167 SUPERFAMILY UBC-like 4 163 IPR016135 -
Lja3g0731 167 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 165 IPR000608 -
Lja3g0731 167 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 4 167 - -
Lja3g0731 167 Pfam Ubiquitin-conjugating enzyme 10 159 IPR000608 -
Lja3g0731 167 Gene3D Ubiquitin Conjugating Enzyme 1 167 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0731 Lja-Chr3 7407277 7411743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0731 12 132 Miscellaneous Gene Families AT3G17000 32.540 1.07e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0731 K10575 - gmx:100499900 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0731 3 7407277 7411743 Lja3g0731 3 7407277 7411743 ECH
Lja3g0731 3 7407277 7411743 Lja3g2787 3 42005312 42009045 ECH
Lja3g2787 3 42005312 42009045 Lja3g0731 3 7407277 7411743 PCT