Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0696 ATGGCTGAGCAGCCGGGTTCCCCTCCGTGCCCTTCGATGAAGCAAAATTCTGAGAAGCTCTCCACCAAGGGGAAGAAGGAAGTCCCAAATGGAAACAATGGTATTTTCAAGAGAATTGATCAAATATTCAACTTTAAAGATCATGGAAATTCTCGAAAGGTTTTAACTGTCTCAGTATTGGTGATAGCCTCATTATTGGTGATAGGGCTATTTTTTGTGCCTTTTTCTTTTGGTCCTGACAAGGAGATTAGCTTTCAGGAGTTTAGAAATAAACTATTGGAACCAGGGTTAGTAGACCACATTGTTGTCTCAAAGAACTTAGTTGCCGAAATATATGTACGGAGCTCTCCCCGTGATCAAACTGACAATGAAGTAGTCCAAGGGACATTCTCTCCAAAGGGATCTGGAGGTCAATACAAATATTATTTCAATATTGGAAGTATTGAGTCTTTTGAGAAGAAGTTAAAGGAAGCACAAGAGGAACTAGGCATTGACCATCATGATTATGTACCTGTTACATATTCTTCTGAAATCGTTTGGTACCTGGAGTTAATGCGATTGGCTCCAGAATTGTTGGTTTCAGTATCTTTCGTATATCTGGTGAGAAGACTACATGGATTTGGTGGTGCCAATATTACTAAAGTAGACAAAAATGCCAAAATCAAGGTCTATTTCAAAGATGTTGCGGGCTGTGATGAGGCAAAGCAAGAAATTATGGAGTTTGTCCACTTCCTAAAGAACCCAAAAAAATATGAAGAACTTGGTGCGAAAATTCCAAAAGGTGCTCTTCTGGTTGGTCCTCCCGGCACAGGGAAAACCCTTTTAGCAAAAGCAACTGCCGGGGAGTCTGGTGTGCCATTTCTTTCTATATCTGGTTCTGATTTCACGGAAATGTTTACTGGTGTCGGACCATCTAGGGTGAGAAGCTTGTTTCAGAAAGCAAAGAAGTGTGCTCCCTGTATTATATTTATTGATGAGATTGATGCGATTGGTCGTGCAAGGGGACGTGGAGGTTCCTCTGGGGCAAATGATGAGCGCGAAAGTACTTTAAATCAATTGCTGGTGGAGATGGATGGTTTTGGAACCACAGTTGGAGTTGTTGTGCTGGCAGGAACAAATAGACCTGATATATTAGACAAAGCCCTACTTAGACCTGGGCGATTTGACCGCAAGATAACAATTGATAAACCTGACATCAAAGGTCGTGACCAGATATTTCAGATCTACTTGAAAAAGATCAAACTTGACCATGAGCCTTCATATTTTTCAGAAAGGCTTGCAGCCCTTACTCCAGGATTTGCTGGAGCAGAGATTGCTAATGTTTGCAATGAAGCTGCTCTAATTGCTGCAAGAGGTGAAAAAACACAAGTCTCAATGGATCACTTTGAGGCAGCTATTGATAGGATTATTGGTGGTTTGGAGAAGAAAAACAAGGTAATAAGCAAGCTGGAAAGGCGTACTGTCGCTTACCATGAGTCAGGCCATGCTGTTGCAGGTTGGTTCTTGGAACATTCTGAACCCTTGTTGAAAGTAACTATTGTTCCTCGTGGAACAGCTGCTCTTGGATTTGCGCAGTATGTTCTGAGTGAGAACCTTCTCATGACAAAGGAGCAGCTTTTCGATATGACTTGTATGACCCTTGGTGGTCAGGCTGCAGAGCAGGTTCTCATAGGGAGAATCTCAACTGGAGCACAGGACGACTTGGAAAAAGTGACCAAGATGACTTATGCTCAAGTGGCCGTCTATGGTTTCAGTGACAAAGTGGGCCTCCTCTCTTTCCCTTCAAGAGAAGACTCATATGAGATGTCGAAGCCTTACAGCAGCAAAACTGCTGCAATCATTGATAATGAAGTGCGACAATTGGTGAACAAAGCGTATGAACAAGTACTTCACCAAGATGATTTGATTCGAGTTTTGGGAGAGCGTCCCTTCAAGGCTGGTGAACTCACCAATTATGATAGGTCAAAGCAAGGTTTTCAAACGGATGAGGAAAAAATCATAGAAAACACCGTCGATGGGCTTGAGGAGGGTGGTGGGGATTCACTTTAG 2049 0.4256 MAEQPGSPPCPSMKQNSEKLSTKGKKEVPNGNNGIFKRIDQIFNFKDHGNSRKVLTVSVLVIASLLVIGLFFVPFSFGPDKEISFQEFRNKLLEPGLVDHIVVSKNLVAEIYVRSSPRDQTDNEVVQGTFSPKGSGGQYKYYFNIGSIESFEKKLKEAQEELGIDHHDYVPVTYSSEIVWYLELMRLAPELLVSVSFVYLVRRLHGFGGANITKVDKNAKIKVYFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFTEMFTGVGPSRVRSLFQKAKKCAPCIIFIDEIDAIGRARGRGGSSGANDERESTLNQLLVEMDGFGTTVGVVVLAGTNRPDILDKALLRPGRFDRKITIDKPDIKGRDQIFQIYLKKIKLDHEPSYFSERLAALTPGFAGAEIANVCNEAALIAARGEKTQVSMDHFEAAIDRIIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHSEPLLKVTIVPRGTAALGFAQYVLSENLLMTKEQLFDMTCMTLGGQAAEQVLIGRISTGAQDDLEKVTKMTYAQVAVYGFSDKVGLLSFPSREDSYEMSKPYSSKTAAIIDNEVRQLVNKAYEQVLHQDDLIRVLGERPFKAGELTNYDRSKQGFQTDEEKIIENTVDGLEEGGGDSL* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0696 682 Pfam FtsH Extracellular 58 165 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Lja3g0696 682 Pfam ATPase family associated with various cellular activities (AAA) 263 395 IPR003959 GO:0005524|GO:0016887
Lja3g0696 682 Gene3D Peptidase M41 479 637 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lja3g0696 682 Pfam AAA+ lid domain 424 464 IPR041569 -
Lja3g0696 682 Gene3D - 72 178 - -
Lja3g0696 682 Gene3D - 209 395 IPR027417 -
Lja3g0696 682 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 34 676 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lja3g0696 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 469 IPR027417 -
Lja3g0696 682 Pfam Peptidase family M41 479 630 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lja3g0696 682 SMART AAA_5 258 398 IPR003593 -
Lja3g0696 682 SUPERFAMILY FtsH protease domain-like 479 643 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lja3g0696 682 MobiDBLite consensus disorder prediction 1 32 - -
Lja3g0696 682 CDD AAA 259 396 - -
Lja3g0696 682 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 13 628 - -
Lja3g0696 682 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 628 673 - -
Lja3g0696 682 ProSitePatterns AAA-protein family signature. 366 384 IPR003960 GO:0005524|GO:0016887
Lja3g0696 682 Gene3D - 397 473 - -
Lja3g0696 682 PANTHER ATP-DEPENDENT PROTEASE 13 628 - -
Lja3g0696 682 PANTHER ATP-DEPENDENT PROTEASE 628 673 - -
Lja3g0696 682 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 187 629 IPR005936 GO:0004176|GO:0004222|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0696 Lja-Chr3 6924543 6936389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0696 61 664 Miscellaneous Gene Families AT2G29080 73.498 0.0 941
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0696 K08956 - gmx:100806656 992.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0696 3 6924543 6936389 Lja3g0696 3 6924543 6936389 ECH