Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0689 ATGCGTGCTGTGGCAAGAACGACAACATCTGTTACCATTCCCGCCAAAAATGTCCTCCTCAGCCACCGGTTTTTCCGATCAGAACCCGAATCCTATGCCAAACTCATCGAACTCTACGCTCACGATCGAGCGTTGCACCTCGGCAAGAAGCTCCACGCGCACCTCACCGTCACCGGCTTCACCTCCTTCAACACCATCGCTTCCAACCTCGTAGCCTTCTACGCGTGCTGCGGCCAACTCTCCCTTGCACGGAAACTGTTCGACAGAATTCCCACCACCAATGTCCGCCGTTGGATCGCGCTCATCAGCGCCTGCGCTCGCTGCGGCTTCCACCACCATGCCATCGCCGTGTTCTCCGAGATGCAAGCTATCCAAGCGCTGAAGCCCCACAATGTTTTCGTCATTCCGAGCGTTCTCAAGGCTTGCGGCCATATCGGCGACCGAGTCGCCGGAGAGCAAGTGCATGGATTGATTATGAAGTGTTCGTTTGAGCTTGATGCGTTTGTGTCCAGCGCGTTGATTGTTATGTACTCTAAGTGTGGTCGTGTTGAGGATGCGCGCAAGGTGTTTGATGGAATGGCTGTGAAGGACTTGGTTTCGATGAATGCTGTTGTTTCTGGGTATGCTCAACAAGGGGCTCCGAATGAGGCGCTGGATTTGGTGGAAAGTATGAATTTGGTGGGGATGAGGCCAAATGTGGTAACGTGGAATGCTTTGATATATGGGTTCTCGCATAAAGGTGATCGAGGAATGGTCTCGGTGATTTTTAACTTGATGATTGCAGCTGGGATTGAGCCTGATGTGGTGTCGTGGACTTCTGTTATATCTGGTCTTGTGCAGAACTTTTGTATTGAGGAAGCATTTGGTACCTTTAAGCAAATGTTGGGTCATGGATTCTGTCCAACTTCTGCTACTATCAGCACCCTTCTTCCTGCTTGTGCTACTGCAGCGAGGGTGAAGCTTGGAAAGGAGATTCATGGCTATGCTTTTGTGATTGGGGTGGAGGAAGATTTGTATGTAAGGAGTGCTCTGGTTGACATGTATGCTAAATGTGGGTTCATTTCTGAAGCGAGGACTCTGTTTCGCAAGATGCCGGAGAAGAACACGGTTACTTGGAACTCTATCATTTTTGGTTACGCGAATCATGGGTATTGCGAGGAAGCTATTGAGCTCTTCAATCAGATGGAATTAGAAGGGGAAGCTAAATTGGATCACTTAACTTTCACGGCAGCTCTCACAGCATGCAGCCATGCTGGAGATATTGAACTTGGGCAGAGGCTGTTCGAGATCATGCAAGAAAAATACAGTATTGAGCCACGGCTGGAGCATTATGCATGCATGGTGGATCTGCTTGGTCGAGCGGGGAAGGTGGAAGATGCATATTGTATGATCAAGACCATGCCTGTTGAACCTGATTTGTTTGTTTGGGGTGCTTTACTGGCGGCTTGCAGGAATCATGGGCATGTGGAGCTTGCAGAAGTGGCTGCTAAGCATTTGTTGGAACTAGAGCCTGAGAGTGCTGGGAACCGTCTTCTGTTGTCCAGCCTGTATGCTGATTCTGGCAGATGGGGAAAGGTTGAGAAGATCAAGAAGATGCTGAAGAAGGGAAAACTCAGAAAACTTCAAGGATTGAGTTGGATAGATAATGTATAA 1653 0.4912 MRAVARTTTSVTIPAKNVLLSHRFFRSEPESYAKLIELYAHDRALHLGKKLHAHLTVTGFTSFNTIASNLVAFYACCGQLSLARKLFDRIPTTNVRRWIALISACARCGFHHHAIAVFSEMQAIQALKPHNVFVIPSVLKACGHIGDRVAGEQVHGLIMKCSFELDAFVSSALIVMYSKCGRVEDARKVFDGMAVKDLVSMNAVVSGYAQQGAPNEALDLVESMNLVGMRPNVVTWNALIYGFSHKGDRGMVSVIFNLMIAAGIEPDVVSWTSVISGLVQNFCIEEAFGTFKQMLGHGFCPTSATISTLLPACATAARVKLGKEIHGYAFVIGVEEDLYVRSALVDMYAKCGFISEARTLFRKMPEKNTVTWNSIIFGYANHGYCEEAIELFNQMELEGEAKLDHLTFTAALTACSHAGDIELGQRLFEIMQEKYSIEPRLEHYACMVDLLGRAGKVEDAYCMIKTMPVEPDLFVWGALLAACRNHGHVELAEVAAKHLLELEPESAGNRLLLSSLYADSGRWGKVEKIKKMLKKGKLRKLQGLSWIDNV* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0689 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 367 IPR002885 -
Lja3g0689 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 194 - -
Lja3g0689 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 244 549 - -
Lja3g0689 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 196 243 - -
Lja3g0689 550 Gene3D Tetratricopeptide repeat domain 100 252 IPR011990 GO:0005515
Lja3g0689 550 Gene3D Tetratricopeptide repeat domain 342 549 IPR011990 GO:0005515
Lja3g0689 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Lja3g0689 550 Pfam PPR repeat 171 194 IPR002885 -
Lja3g0689 550 Pfam PPR repeat 444 467 IPR002885 -
Lja3g0689 550 Pfam PPR repeat 98 122 IPR002885 -
Lja3g0689 550 Pfam PPR repeat 199 224 IPR002885 -
Lja3g0689 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Lja3g0689 550 PANTHER OS03G0271300 PROTEIN 26 194 - -
Lja3g0689 550 PANTHER OS03G0271300 PROTEIN 244 549 - -
Lja3g0689 550 PANTHER OS03G0271300 PROTEIN 196 243 - -
Lja3g0689 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Lja3g0689 550 Pfam PPR repeat family 231 279 IPR002885 -
Lja3g0689 550 Pfam PPR repeat family 367 416 IPR002885 -
Lja3g0689 550 Gene3D Tetratricopeptide repeat domain 253 329 IPR011990 GO:0005515
Lja3g0689 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Lja3g0689 550 TIGRFAM PPR: pentatricopeptide repeat domain 172 197 IPR002885 -
Lja3g0689 550 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Lja3g0689 550 TIGRFAM PPR: pentatricopeptide repeat domain 234 268 IPR002885 -
Lja3g0689 550 TIGRFAM PPR: pentatricopeptide repeat domain 370 399 IPR002885 -
Lja3g0689 550 SUPERFAMILY TPR-like 336 507 IPR011990 GO:0005515
Lja3g0689 550 Pfam E motif 486 548 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0689 Lja-Chr3 6842615 6844385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0689 83 548 Glycoside Hydrolase AT3G49170 32.669 3.12e-84 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0689 - - gmx:100790576 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0689 3 6842615 6844385 Lja3g0689 3 6842615 6844385 ECH