LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g0687	ATGGCATCATCATCAACTACTCTCTTCAATTTCACCCTATCATCTAACTCACTTCTTCACCATCAAAGGACAAAGAGTTCAAAACCTCTTCTCTCTTCCTCTCGCATCATCAACCAACACACTGTTTCTTCCATTAACCACCATTTGGTTCCCACACGCGTCACATATCCACTTCTTCCTTCTTCTTCTGCTCCTAACAGCAGATTCCACGTGAGGTCCCAGAAGCAGAAGGTGTATTCTGCTGGAGGAAAATCGGAGCCGCTTGCTTCTGATGCAAAATACCAAGAGGAATTCTCTTTGTCTTCTGTGATTCTTCCGTTTTTGTTCCCTGCATTAGGTGGCTTGTTATTTGGTTATGATATCGGTGCCACCTCCGGTGCTACAATTTCACTGCAGTCACCTGAGCTTAGTGGGATAACTTGGTTCAATCTTTCTTCCATTCAGCTTGGACTTGTGGTCAGTGGTTCCCTATATGGGGCTCTTCTTGGCTCAATTCTTGCATTTGCTGTTGCTGATTTCCTTGGGAGGAAACGGCAACTTATTGTTGCAGCCTTGTTGTATATACTTGGTGGTGCAATCACTGCTGCTGCACCAGAACTTAATGTCCTCTTAGCAGGAAGGCTGCTTTATGGGCTTGGTATTGGTTTGGCCATGCATGGGGCTCCTTTATATATAGCAGAAACTTGTCCATCACAAATCCGTGGGACTCTAGTATCACTAAAAGAGCTCTTCATTGTCCTGGGGATTCTGGGGGGCTATTTTGTCGGAAGCTTTCAGATTAGTTCAGTTGGGGGATGGCGATTCATGTATGGATTTAGTGCTCCAGTTGCCGTGTTAATGGGACTTGGAATGTGGACTCTCCCCGCTTCTCCACGGTGGTTGCTTCTCAAAGCAGTGCAAGGAAAAGGTTCTTTTCAAGATTTGAAGGAAAAGGCAATTTTTTCCCTGAGCAAATTAAGGGGCCGACCACCCGGTGATAAAGAATCCGAGAGGCAAATAGAAGAGACCCTTGTCTCATTGAAGTCTGCCTATAAAGATCAGGAATCCGAGGGCAATTTCTTAGAGGTTTTTCAGGGTCCTAATCTGAAAGCCTTCATAATTGGTGGGGGGCTAGTCTTATTTCAACAGATAACAGGTCAACCTAGTGTTCTGTATTATGCAGGTTCAATTCTCCAGAGTGCTGGATTTTCAGCTGCATCTGATGCTACTAAAGTTTCAGTTGTTATCGGCTTATTCAAGTTACTAATGACATGGGTTGCTGTCCTAAAAGTAGATGATCTTGGGAGAAGACCTCTGCTGATTGCAGGCGTCAGTGGCATAGGTCTCTCTTTAGGTCTCCTGTCTGCTTATTATAAATTTCTTGGAGGATTCCCACTTGTTGCTGTTGGAGCTTTACTTCTTTATGTTGGTTGCTACCAGATATCATTTGGGCCAATAAGCTGGCTTATGGTATCAGAAATCTTCCCAATTCGCACTAGAGGACGGGGGATTAGTCTGGCTGTTCTTACCAACTTTGCTTCAAATGCTGTCGTCACCTTTGCATTCTCACCATTAAAGGAGCTTCTAGGAGCTGAGAACCTTTTTCTCCTTTTTGGTGCCATTTCTTTAGTGGCACTTCTGTTCGTTATATTTTCTGTCCCTGAGACTAAAGGCTTGAGCTTAGAAGAAATAGAATCCAAAATCTTGAAGTGA	1692	0.4403	MASSSTTLFNFTLSSNSLLHHQRTKSSKPLLSSSRIINQHTVSSINHHLVPTRVTYPLLPSSSAPNSRFHVRSQKQKVYSAGGKSEPLASDAKYQEEFSLSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGITWFNLSSIQLGLVVSGSLYGALLGSILAFAVADFLGRKRQLIVAALLYILGGAITAAAPELNVLLAGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLVSLKELFIVLGILGGYFVGSFQISSVGGWRFMYGFSAPVAVLMGLGMWTLPASPRWLLLKAVQGKGSFQDLKEKAIFSLSKLRGRPPGDKESERQIEETLVSLKSAYKDQESEGNFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGSILQSAGFSAASDATKVSVVIGLFKLLMTWVAVLKVDDLGRRPLLIAGVSGIGLSLGLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPIRTRGRGISLAVLTNFASNAVVTFAFSPLKELLGAENLFLLFGAISLVALLFVIFSVPETKGLSLEEIESKILK*	564

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g0687	563	Pfam	Sugar (and other) transporter	109	558	IPR005828	GO:0016021\|GO:0022857\|GO:0055085
	Lja3g0687	563	ProSitePatterns	Sugar transport proteins signature 2.	209	234	IPR005829	GO:0016021\|GO:0022857\|GO:0055085
	Lja3g0687	563	Gene3D	MFS general substrate transporter like domains	97	561	IPR036259	-
	Lja3g0687	563	PRINTS	Sugar transporter signature	375	385	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lja3g0687	563	PRINTS	Sugar transporter signature	114	124	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lja3g0687	563	PRINTS	Sugar transporter signature	462	483	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lja3g0687	563	PRINTS	Sugar transporter signature	204	223	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lja3g0687	563	PRINTS	Sugar transporter signature	485	497	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lja3g0687	563	ProSiteProfiles	Major facilitator superfamily (MFS) profile.	106	550	IPR020846	GO:0022857
	Lja3g0687	563	TIGRFAM	SP: MFS transporter, sugar porter (SP) family	97	557	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lja3g0687	563	SUPERFAMILY	MFS general substrate transporter	102	558	IPR036259	-
	Lja3g0687	563	ProSitePatterns	Sugar transport proteins signature 1.	167	184	IPR005829	GO:0016021\|GO:0022857\|GO:0055085
	Lja3g0687	563	PANTHER	D-XYLOSE-PROTON SYMPORTER-LIKE 2	72	563	-	-
	Lja3g0687	563	Coils	Coil	330	350	-	-
	Lja3g0687	563	PANTHER	D-XYLOSE-PROTON SYMPORTER-LIKE 3, CHLOROPLASTIC	72	563	-	-
	Lja3g0687	563	CDD	MFS_GLUT10_12_Class3_like	109	557	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g0687	Lja-Chr3	6831060	6835173	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g0687	69	563	Organic Solute Cotransporters	AT5G59250	79.839	0.0	783

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g0687	-		-	gmx:100800071	875.93

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja3g0687	3	6831060	6835173	Lja3g0687	3	6831060	6835173	ECH