Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0680 ATGGCTGAGGCAAACACAGGCAGCAGGAGCAGCAGGTGGTCTTTACAAGGGATGACAGCTCTGGTCACTGGTGGATCCAAAGGAATAGGATATGAAATTGTGGAGGAGTTAGCACATCTTGGAGCCACTGTTCACACTTGCTCTAGGAATGAAGCTCAGCTCACTGAATCATTACATCAATGGGCTTCAAAAGGATACAGAGTCACTGGTTCAGTCTGTGATGCAGCTTCTCGTGCACAGAGAGAGGACCTCATAGCTAGAGTCTCATCTGAGTTCAATGGCAAACTCAATATCCTTGTGAACAATGTGGGGACAAACATACTGAAACCAACCGTGGATTATACAGAGGATGATTTTTCATTTCTGACCAACACAAATCTTGAATCTGCTTTCCACATAACCCAGCTTTCACATCCTCTTCTAAAAGCTTCTGGGGCTGCAAGCATCGTTTTTATATCCTCAATTGCTGGGCTGATAACCTTTAATGGATCAATATATGGTGCAGCAAAAGGAGCTATCAACCAACTGACAAGAAATCTGGCATGTGAATGGGCAAATGACAATATCAGGACTAATTGTGTTGCACCAGGGCCAATCAGAACCCCTCTTGCTGAATCGGCCTTGAAAGATGAAAAACTTGTTACTAGTATTACTTCAAGAATCCCTCTTGGGCGGATTGGAAGGGCGGAAGAGGTGTCTTCCATGGTTGCATTCCTCTGCTTACCTGCTGCTTCTTTCATGACAGGACAGATCATCAGTGTTGATGGTGGTATGACTGCCAATGGTCTCTTAATCTGA 798 0.4461 MAEANTGSRSSRWSLQGMTALVTGGSKGIGYEIVEELAHLGATVHTCSRNEAQLTESLHQWASKGYRVTGSVCDAASRAQREDLIARVSSEFNGKLNILVNNVGTNILKPTVDYTEDDFSFLTNTNLESAFHITQLSHPLLKASGAASIVFISSIAGLITFNGSIYGAAKGAINQLTRNLACEWANDNIRTNCVAPGPIRTPLAESALKDEKLVTSITSRIPLGRIGRAEEVSSMVAFLCLPAASFMTGQIISVDGGMTANGLLI* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0680 265 Gene3D - 2 264 - -
Lja3g0680 265 PANTHER TROPINONE REDUCTASE 2 264 IPR045000 GO:0016491
Lja3g0680 265 Pfam Enoyl-(Acyl carrier protein) reductase 26 259 - -
Lja3g0680 265 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 153 181 IPR020904 GO:0016491
Lja3g0680 265 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Lja3g0680 265 PRINTS Glucose/ribitol dehydrogenase family signature 94 105 IPR002347 -
Lja3g0680 265 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Lja3g0680 265 PRINTS Glucose/ribitol dehydrogenase family signature 166 185 IPR002347 -
Lja3g0680 265 PRINTS Glucose/ribitol dehydrogenase family signature 187 204 IPR002347 -
Lja3g0680 265 PRINTS Glucose/ribitol dehydrogenase family signature 222 242 IPR002347 -
Lja3g0680 265 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 264 - -
Lja3g0680 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 105 IPR002347 -
Lja3g0680 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Lja3g0680 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 IPR002347 -
Lja3g0680 265 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 261 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0680 Lja-Chr3 6792532 6794593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0680 1 263 Miscellaneous Gene Families AT2G29150 63.258 1.93e-123 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0680 K08081 - gmx:100780806 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0680 3 6792532 6794593 Lja3g0680 3 6792532 6794593 ECH