Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0671 ATGTCAATAGTTTCTATCAACCAGGGTCATGGCAATGGCTCCAATTCATCTCAGGGCTCATGGGATCCCACCAATGCTCTGTCTTCTTGGGATCCCTTCATGGATTTCCACTTCCCCATCATCCCTCCTTCCATTTCCAGTTTCTTCCCTGACATCGGGTTCGGGTCATCTCTGAATACCCGTTTGGACTGGAGGGAGACACCGAGAGCACACGTGTGGAAGGTGGTGCTTCCTGGCTTCACTGACGAAGACGTGCTGGTTGAGCTCCAAGATGAGAGGGTGCTGCAGGTGAGCGTCGACAGTGGCAATTTCGTGAGCAGGTTTAAGGTCCCCGAGGATGGTAACCTCCAAGAGCTCAAGGCCAACATGATGCCTAACGAGGTTCTGGTCATCACTGTTCCCAAGTTTGAGCAACCCTCTGTTGGCGGAGGAAGGAACATCAGGGTCGTTGAGATTGAGGGTTCTGATGACTGA 474 0.5232 MSIVSINQGHGNGSNSSQGSWDPTNALSSWDPFMDFHFPIIPPSISSFFPDIGFGSSLNTRLDWRETPRAHVWKVVLPGFTDEDVLVELQDERVLQVSVDSGNFVSRFKVPEDGNLQELKANMMPNEVLVITVPKFEQPSVGGGRNIRVVEIEGSDD* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0671 157 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 53 153 IPR002068 -
Lja3g0671 157 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 1 155 - -
Lja3g0671 157 Gene3D - 18 149 IPR008978 -
Lja3g0671 157 SUPERFAMILY HSP20-like chaperones 32 139 IPR008978 -
Lja3g0671 157 Pfam Hsp20/alpha crystallin family 63 149 IPR002068 -
Lja3g0671 157 MobiDBLite consensus disorder prediction 1 22 - -
Lja3g0671 157 PANTHER 17.5 KDA CLASS I HEAT SHOCK PROTEIN 1 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0671 Lja-Chr3 6742802 6743540 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0671 K13993 - gmx:100797426 178.333