Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0664 ATGTTTCGAGTGGCGGTGCGATGGAATTGGAGGCCAATGGCTTCTTCTCTCCCTCTAACTCACTTCTTCCCACTCAACCCTAGGCCTCGATTCCGCACCTCCAAGCTCTTCTGTTCCGCCGACCTGCAACCATACCTCCGCTGCTCCATGCCGCAGAAGCCTCTCCGAGTCGCCGTTCTCGTTAGCGGCGGCGTCGACAGCAGCGTCGCTCTCCGTCTCCTCCACTCCGCCGGCCATTCCTGCACCGCCTTCTACCTCAAGATATGGTTTCAAGAAGATTTTGAGAACTACTGGTCGGAATGCCCCTGGGAAGAGGATTTGAAGTTTGCCAAAGCTGTTTGCAATCAGGTTGAAGTACCATTACAAGTTGTTCATTTGACTGATGAATATTGGAACAATGTGGTTTCTTACATCATTGAAGAGTATCGTTGTGGCCGAACGCCTAACCCAGATGTTCTTTGCAATACAAGAATAAAGTTCGGTGCATTCTTGGATGCTATCAACGGTATGGGTTTTGACTATGTTGCCTCTGGGCATTATGCAAAGGTTATCCACCCGTTTGAAGATCAGATGGATGAGCTTTCTGTTCTTGAATTATCACAAGACATGGTGAAGGACCAAACATACTTTCTCTCTCACCTCTCACAATCCCAGTTGAAGCGACTTCTTTTTCCGCTTGGTTGTATTCCCAAGGATGAAGTTCGTAGGTTGGCCACCAAATTTGATCTACCGAATAAGGATAGAAAGGATTCCCAGGGAATATGCTTTTTGGGCAAGATAAGATTCAGTGAATTTGTTGCAAGACATATTGGGGAGAGAGAAGGTATCATACTGGAAGCTGAGACAGGAGATTTCCTTGGCAAACACCGGGGCTTTTGGTTTTATACTATTGGTCAGCGTCAGGGTCTACGGTTACCTGGAGGCCCATGGTATGTTGTTGAGAAGGATGTTAAAAACAATGTAGTTTTTGTGTCAAGAAATTACTTTTCCTTTGACAAAAGAAGGCGCATATTTCGTGTTGGCTCTTTAAAATGGTTTAGTGGGTTACCCCCTAGCCCGACAAGTCAGCTCAAATGCAAGGTGAGACATGGCCCTGGATTCTATAATTGTAGCTTACAAATGGAAGTTGCAAGTGATAACCAAGTTGACGCTGCCGTCGTCCACATATCTGAAGACGATCAAGGCCTAGCAGCTGGGCAGTTTGCGGCCTTCTATGAGGGAAGGACATGTATAGGTTCTGGTGTGATTTTGGAGTCCTGGGATGATCAAAGTTTTCCAGTCTGTGCAAAAGCTTTAGAAATTGCAAGAATGGAAGATAAATCAAAGATTGGTAATCCAGTTAAGATAAAAGTTAAACCAGATATCCCACAAGAAGTGTGTGATTCCAAAGAGTTGGCGAGTAAAGCATCATAA 1413 0.4536 MFRVAVRWNWRPMASSLPLTHFFPLNPRPRFRTSKLFCSADLQPYLRCSMPQKPLRVAVLVSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENYWSECPWEEDLKFAKAVCNQVEVPLQVVHLTDEYWNNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFLDAINGMGFDYVASGHYAKVIHPFEDQMDELSVLELSQDMVKDQTYFLSHLSQSQLKRLLFPLGCIPKDEVRRLATKFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEREGIILEAETGDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRIFRVGSLKWFSGLPPSPTSQLKCKVRHGPGFYNCSLQMEVASDNQVDAAVVHISEDDQGLAAGQFAAFYEGRTCIGSGVILESWDDQSFPVCAKALEIARMEDKSKIGNPVKIKVKPDIPQEVCDSKELASKAS* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0664 470 Gene3D HUPs 44 268 IPR014729 -
Lja3g0664 470 TIGRFAM trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 56 416 IPR004506 GO:0008033|GO:0016740
Lja3g0664 470 Pfam tRNA methyl transferase HUP domain 56 259 - -
Lja3g0664 470 PANTHER - 37 449 - -
Lja3g0664 470 Gene3D - 269 328 IPR023382 GO:0016783
Lja3g0664 470 Gene3D Translation factors 335 425 - -
Lja3g0664 470 Pfam Aminomethyltransferase beta-barrel domain 336 416 IPR046885 -
Lja3g0664 470 Hamap tRNA-specific 2-thiouridylase MnmA [mnmA]. 55 417 IPR004506 GO:0008033|GO:0016740
Lja3g0664 470 CDD tRNA_Me_trans 56 416 IPR004506 GO:0008033|GO:0016740
Lja3g0664 470 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 56 301 - -
Lja3g0664 470 Pfam tRNA methyl transferase PRC-barrel domain 264 326 IPR046884 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0664 K21027 - gmx:100785275 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0664 3 6589392 6593496 Lja3g0664 3 6589392 6593496 ECH