Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0620 ATGCTTCTGCAACAAGTTCATGTATCAAATTCAAGGCCAAATGGTTTCATCTTGCACAAGCCATGCTTGATCCAGAGTAATTACCACCCATCTTTTCAGGTTTTGTCAAGGCCTTCTTCCTTGGCAAACCAAAAGAAGCAAAAAAGGTTGGTTAGGCATCATGGCTGCAGTAAAATCAAAGCTGTGGCTGTGAGTACCGAAATTGAACTGAAATCAACTACGGTTAAAGCCACCGTAACTGTTCAGCCTACGGTTGGTGGGTTTTTCTCAGAACTTGGTTTAGACCGAGGGTTGGATGATTTAACAGATTTACTTGGTAAATCACTTCTCTTGGAGCTTGTTAGCGTCTCGCTAGATCCCAAAACAACACAAGAGAAGGAAAATATCAAAGGCTACGTCCACAAGACGCATCAATCAGCACAAGAGGTTAAGTATGAGGCTGAATTTGAAGTACCAGAAAGCTTTGGGGAGATTGGTGCCATTCTTGTGGAAAATGAGCATCACAAGGAGATGTTTCTTAAGGAAATTGTTCTTGATGGCTTCCTCACTGGCCCCGTCAGTTTTTCCTGTGAATCCTGGGTTCATTCCAAGTATGATAACCCTGTTAAGAGGGTGTTTTTCTCCAATAAGTCATTTTTACCCTCAGAAACACCAGAAGGATTGCAGAAGCTGAGAGAACAGGAACTGTTACATTTACGCGGCAATGGCCAAGGTGAACGCAAAACCTTCGAGCGAATCTACGATTACGATGTCTACAACGACCTCGGAGATCCCGACAGCGACATCGAACTCAAACGACCTGTTCTTGGCGGCAACCAACATCCATACCCTCGGCGTTGCAGAACCGGAAGACCTCGTTGCCACAAAGATCCGTTATCGGAGAAAAGGAGCAACACGGTGTATGTACCTAGGGATGAATGTTTCGCAGAAGTGAAGCAGCTATCGTTTTCGGCCAAGACATTGTATTCAGGGTTGCATGCTCTGGTGCCGTCACTGAGTACAGCTATAGTTGACAAGAATCTTGGGTTTCCTGTGTTTTCAGCCATTGATGCCCTTTTCAATGAAGGGCTCAGCTTGCCTCCTCAGAAAGCCAGAGGACTTCTCAGCGGGCTTTTGCCGAGGCTGGTCAAGTTAATCCAAGACACTGAGAATGATGTTCTCCGTTTCGAGACTCCCGCAACAATGGACAAGGACAGGTTCTTTTGGTTTAGGGATGAAGAATTTGCAAGGCAAACTGTAGCTGGTCTTAACCCATGTTGCATCCAATTGGTCACGGAATGGCCAATGAGAAGCAAACTTGACCCTGAAATTTATGGCCCTCCGGAATCAGCAATTACCACTGAAATAGTTGAGCGAGAAATCAGAGGATTCTTTACGGTGGAAGAGGCCATAAAACAGAAGAAGCTATATGTCCTGGACTACCACGATTTTTTATTGCCATTTGTGGAGCAAGTTAGACAACTTGAAGGCACAACGCTATACGGGTCAAGGACATTGTTCGTCCTAACCCACGATGGCACATTGAGGCCACTGGCTATTGAGCTAACTCGGCCACCAATGGATGGAAAGCCGCAATGGAGGGAAGTGTACACACCTTCTTGGCACTCAACTTCCGTTTGGCTTTGGAGGCTTGCCAAAGCTCATGTCCTTGCACATGACTCTGGTTACCACCAACTTGTTAGTCACTGGCTACGGACTCATTGTGCAACAGAACCTTACATAATTGCCACAAACAGGCAACTGAGTGCAATGCATCCAATCTACAGGCTGCTGCATCCACATTTTAGGTACACAATGGAGATCAATGCTCTTGCTCGTGAGGCATTGATAAATGCCAATGGAGTAATAGAGAACAATTTCACTCCAGGGAACCTCTCCATCCTTCTAAGTTCAGTTGCCTATGACCAGCACTGGCAGTTTAACTTGCAAGCTCTCCCTGCTGACCTCATCCACAGGGGATTGGCAGAGGAGGACCCAAATGCTCCTCATGGCTTAAAGCTATCCATAGAAGACTACCCTTATGCCAATGATGGCCTCATTCTCTGGGATGCTATCAAAAGTTGGGTCACTGATTATGTGAACCATTACTACTCAGAGCCAGAAGCGAACACAGACCAAGAACTGCAAGCATGGTGGGAAGAGATCAGAACAGTAGGCCATGGTGACAAAAAGGACGAGCCTTGGTGGCCTGTTCTGAAAACCAAACAAGACCTTATTGAGATTGTGACCACCATTGTGTGGATAACATCAGGGCACCATGCAGCTGTGAACTTCGGACAACCAACTGTTGCAAGAAACAATATGCCAACAGAGGACCCTTCTGACCCTGAATGGGAACTTTTCTTGGACAAACCAGAGGTGACACTGCTCAAGTGTTTCCCATCTCAGATTCAAGCCACAACTATAATGGCAGTGTTGGATATTTTGTCAAGCCACTCATCTGATGAGGAGTATCTCGGGCAAACTGTGGAGCCATCATGGGAACAGGATCCAATTATCAAAGCTTCGTTTGAAAAGTTTCAAGGGAAGTTGATGGAGCTTGAAGGGATCATTGATTTGAGTAATGCAGATAAGAGCCGGAAGAACAGAAATGGTGCTGGGATTCCTCATCAACTGCAGCATCAAACACAGCACAACACCAATCAAACCCTCCTGTTTCATCAACGCCCATTCGTCCATAGAAGTGCATCTCTTCCGCTATGGTCATGGAAGCAAGTGCAAAACCAAAAGCAGGTTAAGCGCCTCCTCCAACTCGTTCCTCCCAATGTTCAAAGCAACTCTACTTCTTCTGCAACAACTGCAACAGATACTGCAGAGATTAAGACCACCACAGAAAATGGCACTGCAGTGAAGCTTAAAGCTGTGGTTAAGGTTAAGATAACTTCTTCTGGTTTTTTCTCCAGTCTGAGGTTAGACCAGAGAATCGATGATCTCACGGATTTGCTTGGTAAATCTATCCTCTTGGAGCTAGTTAGCTCCGAACTTGACCCCGAGACAGGGACAGAGAAGGAGACAATAAAAGCGTACGCACACAAAGCAGGACGAGGTGAAGAATCTGTCAAGTATGAAGCTGATTTCAAAATCCCAAACGATTTCGGAGAAGTCGGTGCTATTCTTGTGGAGAATGAGCACCACACGGAGATGTTCCTCGAAACCATTCTCCTCGATGGTTTCCCAGATGGTCCTGTTCACATTGATTGTTCCTCTTGGGTTCACTCCAAGTTCAATTCCCTCACCAAACGGGTCTTCTTCACCAACAAGTGTTACTTGCCGTCGGAGACACCGAGTGGGCTAAGGAGATTGAGAGAAGAGGAATTGAGTAATCTGCGGGGCAATGGTGAAGGTGAACGCAAGAGCTTTGAGAGGATATATGATTATGATGTGTACAATGACATTGGGGATCCTGATCATAGCCTTGATCTGCAAAGACCTCCTTTAGGTGGCAAACTACATCCATATCCGAGACGTTGTCGAACTGGCCGTCCGCATAGCGAAGCAGATCGGTTATCTGAAAAGAGAACTAGACAATTTTATGTTCCAAGGGATGAGTGCTTCTCAGAGGTGAAGGAGCTAACGTTCTCGACCAAGGCCTTACATGCAGTGCTGCTAATATTGCTTCCATCTTTGGGGAGTATTATGAGAGAAGGGGAGCTTTCTTTTTCATTCTTTCACGACATAGATTCACTTTTCAGCGTTGGACTTGACTTGCCTCCTGAAAATGAACCTGAGAAGGGATTCTTAGGAACCATGATGCCTAGGCTCGTCAAAAGTATTTCTGGTGATAGCGGACATGTGCTTCGCTTTGAGATCCCAGAAACAATGAACAGGGACAGGTTTTTCTGGTTCCGGGATGAGGAATTCGCTAGACAGACTGTTGCTGGTCTCAACCCATACAGCATTAAATTGGTCAAAGAATGGCCATTGAGGAGTAAACTTGATCCAAATATATATGGTCCAGCAGAATCAGCAATCACCTCAGAAATGATCAATAAAGAGATTGGAGGCATACTTTCTGTAGAAAAGGCGATCGAAGAAAAGAAGCTGTTCATGCTAGACTACCATGACATATTGTTACCCTTTGTAAGAAAAGTACGCAAACTCAAAGGAAAATCACTCTATGGTTCACGAACTTTGTTCTTTCTAAATTCAGAGGGGACTCTGAGGCCTCTTGCCATTGAGCTGACTAGGCCACCAATGGATGGAAAGGGCCAATGGAAGCAAGTTTTCAGACCTTCTTGGCACTCAACCAGTATTTGGCTCTGGAGGATTGCCAAGGCTCATGTTCTTGCACATGACTCTGGCTATCACCAACTTGTCAGTCATTGGTTAAGAACTCATTGTGTGACAGAGCCCTATGTTATTGCAACTAATAGGCAACTTAGTGTGGCACACCCCATATATAGATTGTTACACCCTCATTTTCGTTACACGATGGAGATTAATGCTCTGGCACGGGAAGCCCTTATCAATGCTAATGGCACAATTGAGAGTTCATTCTCGCCAGGAAAGTACTCTATGGAGCTTTGCTCGGCTGCTTACGGTCTTGAATGGCGATTTGACATGGAGGCTCTACCTGCAGACTTGATTAGAAGGGGAATGGCTGTGGAAGATCCATTTGCTCCTCATGGGTTAAGGCTTACCATTCCAGACTATCCATTTGCCAATGATGGGCTCCTTCTATGGGATGCTATAAAGCTATGGGTCACTGACTATGTTAACCATTATTACCCTGAACCTAAACTTGTGGAGTTAGATGAAGAGCTACAAGCATGGTGGACAGAGATTCGAACAGTTGGTCATGCAGACAAAAAGGATGAACCATGGTGGCCAGTTCTTAAAACCCCAAAAGACCTCATTAAAATTCTCAACATCATCATATGGGTGACTTCTGGTCACCATGCTGCTGTGAACTTTGGGCAATACACTTATGGGGGTTATTTCCCAAACCGGCCGACAATTGCTAGAACTAAAGTGCCCTCAGAGGACCCTACAGAAGAAGAGTGGAAAAAGTTCATTGCAAAACCTGAAAGGGCACTTCTGAAGTGCTTTCCCTCAAAACTGCAAGCAACTAGAGTCATGGCTGTGTTGGATATATTGTCGACTCATTCACCAGATGAGGAGTACATAGGGGAGAAGATGGAACCATCATGGGCTGAAAACCCTGTCATAAAGGCTGCTTTTGAACGATTCAGAGAAAGACTGAAGAAGATAGAAAAAATAATAGATGACAGGAATGAAAATCCAAAGTTGAAGAACAGAAATGGAGCTGGCGTTGTCCCATACGAGCTTTTGAAGCCATTCTCCAAGCCTGGTTTGACTTCAATGGGTGTTCCCTGTAGTATATCTATTTAA 5352 0.4514 MLLQQVHVSNSRPNGFILHKPCLIQSNYHPSFQVLSRPSSLANQKKQKRLVRHHGCSKIKAVAVSTEIELKSTTVKATVTVQPTVGGFFSELGLDRGLDDLTDLLGKSLLLELVSVSLDPKTTQEKENIKGYVHKTHQSAQEVKYEAEFEVPESFGEIGAILVENEHHKEMFLKEIVLDGFLTGPVSFSCESWVHSKYDNPVKRVFFSNKSFLPSETPEGLQKLREQELLHLRGNGQGERKTFERIYDYDVYNDLGDPDSDIELKRPVLGGNQHPYPRRCRTGRPRCHKDPLSEKRSNTVYVPRDECFAEVKQLSFSAKTLYSGLHALVPSLSTAIVDKNLGFPVFSAIDALFNEGLSLPPQKARGLLSGLLPRLVKLIQDTENDVLRFETPATMDKDRFFWFRDEEFARQTVAGLNPCCIQLVTEWPMRSKLDPEIYGPPESAITTEIVEREIRGFFTVEEAIKQKKLYVLDYHDFLLPFVEQVRQLEGTTLYGSRTLFVLTHDGTLRPLAIELTRPPMDGKPQWREVYTPSWHSTSVWLWRLAKAHVLAHDSGYHQLVSHWLRTHCATEPYIIATNRQLSAMHPIYRLLHPHFRYTMEINALAREALINANGVIENNFTPGNLSILLSSVAYDQHWQFNLQALPADLIHRGLAEEDPNAPHGLKLSIEDYPYANDGLILWDAIKSWVTDYVNHYYSEPEANTDQELQAWWEEIRTVGHGDKKDEPWWPVLKTKQDLIEIVTTIVWITSGHHAAVNFGQPTVARNNMPTEDPSDPEWELFLDKPEVTLLKCFPSQIQATTIMAVLDILSSHSSDEEYLGQTVEPSWEQDPIIKASFEKFQGKLMELEGIIDLSNADKSRKNRNGAGIPHQLQHQTQHNTNQTLLFHQRPFVHRSASLPLWSWKQVQNQKQVKRLLQLVPPNVQSNSTSSATTATDTAEIKTTTENGTAVKLKAVVKVKITSSGFFSSLRLDQRIDDLTDLLGKSILLELVSSELDPETGTEKETIKAYAHKAGRGEESVKYEADFKIPNDFGEVGAILVENEHHTEMFLETILLDGFPDGPVHIDCSSWVHSKFNSLTKRVFFTNKCYLPSETPSGLRRLREEELSNLRGNGEGERKSFERIYDYDVYNDIGDPDHSLDLQRPPLGGKLHPYPRRCRTGRPHSEADRLSEKRTRQFYVPRDECFSEVKELTFSTKALHAVLLILLPSLGSIMREGELSFSFFHDIDSLFSVGLDLPPENEPEKGFLGTMMPRLVKSISGDSGHVLRFEIPETMNRDRFFWFRDEEFARQTVAGLNPYSIKLVKEWPLRSKLDPNIYGPAESAITSEMINKEIGGILSVEKAIEEKKLFMLDYHDILLPFVRKVRKLKGKSLYGSRTLFFLNSEGTLRPLAIELTRPPMDGKGQWKQVFRPSWHSTSIWLWRIAKAHVLAHDSGYHQLVSHWLRTHCVTEPYVIATNRQLSVAHPIYRLLHPHFRYTMEINALAREALINANGTIESSFSPGKYSMELCSAAYGLEWRFDMEALPADLIRRGMAVEDPFAPHGLRLTIPDYPFANDGLLLWDAIKLWVTDYVNHYYPEPKLVELDEELQAWWTEIRTVGHADKKDEPWWPVLKTPKDLIKILNIIIWVTSGHHAAVNFGQYTYGGYFPNRPTIARTKVPSEDPTEEEWKKFIAKPERALLKCFPSKLQATRVMAVLDILSTHSPDEEYIGEKMEPSWAENPVIKAAFERFRERLKKIEKIIDDRNENPKLKNRNGAGVVPYELLKPFSKPGLTSMGVPCSISI* 1784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0620 1783 CDD PLAT_LH2 73 209 IPR042057 -
Lja3g0620 1783 Gene3D - 1280 1413 - -
Lja3g0620 1783 Gene3D PLAT/LH2 domain 75 230 - -
Lja3g0620 1783 Coils Coil 1727 1747 - -
Lja3g0620 1783 Pfam Lipoxygenase 220 868 IPR013819 GO:0016702|GO:0046872
Lja3g0620 1783 Pfam Lipoxygenase 1097 1766 IPR013819 GO:0016702|GO:0046872
Lja3g0620 1783 ProSitePatterns Lipoxygenases iron-binding region signature 2. 1463 1473 IPR020834 GO:0016702|GO:0046872
Lja3g0620 1783 PRINTS Lipoxygenase signature 557 574 IPR013819 GO:0016702|GO:0046872
Lja3g0620 1783 PRINTS Lipoxygenase signature 577 597 IPR013819 GO:0016702|GO:0046872
Lja3g0620 1783 PRINTS Lipoxygenase signature 539 556 IPR013819 GO:0016702|GO:0046872
Lja3g0620 1783 Gene3D - 554 884 - -
Lja3g0620 1783 ProSitePatterns Lipoxygenases iron-binding region signature 1. 557 571 IPR020833 GO:0016702|GO:0046872
Lja3g0620 1783 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 211 885 IPR013819 GO:0016702|GO:0046872
Lja3g0620 1783 Pfam PLAT/LH2 domain 1000 1084 IPR001024 GO:0005515
Lja3g0620 1783 Pfam PLAT/LH2 domain 126 207 IPR001024 GO:0005515
Lja3g0620 1783 Gene3D PLAT/LH2 domain 929 1089 - -
Lja3g0620 1783 PANTHER LIPOXYGENASE 63 869 - -
Lja3g0620 1783 ProSitePatterns Lipoxygenases iron-binding region signature 2. 584 594 IPR020834 GO:0016702|GO:0046872
Lja3g0620 1783 Gene3D - 1090 1188 - -
Lja3g0620 1783 Gene3D - 419 553 - -
Lja3g0620 1783 SUPERFAMILY Lipoxigenase 213 868 IPR036226 -
Lja3g0620 1783 MobiDBLite consensus disorder prediction 1150 1171 - -
Lja3g0620 1783 ProSiteProfiles PLAT domain profile. 954 1085 IPR001024 GO:0005515
Lja3g0620 1783 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 74 212 IPR036392 GO:0005515
Lja3g0620 1783 CDD PLAT_LH2 973 1086 IPR042057 -
Lja3g0620 1783 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 1088 1783 IPR013819 GO:0016702|GO:0046872
Lja3g0620 1783 Gene3D - 1416 1782 - -
Lja3g0620 1783 SUPERFAMILY Lipoxigenase 1090 1783 IPR036226 -
Lja3g0620 1783 ProSiteProfiles PLAT domain profile. 88 208 IPR001024 GO:0005515
Lja3g0620 1783 Gene3D - 331 418 IPR027433 -
Lja3g0620 1783 Gene3D - 231 329 - -
Lja3g0620 1783 PANTHER LIPOXYGENASE 911 1782 IPR000907 GO:0016702|GO:0046872
Lja3g0620 1783 PANTHER LIPOXYGENASE 63 869 IPR000907 GO:0016702|GO:0046872
Lja3g0620 1783 PRINTS Plant lipoxygenase signature 806 820 IPR001246 GO:0016491
Lja3g0620 1783 PRINTS Plant lipoxygenase signature 275 294 IPR001246 GO:0016491
Lja3g0620 1783 PRINTS Plant lipoxygenase signature 178 196 IPR001246 GO:0016491
Lja3g0620 1783 PRINTS Plant lipoxygenase signature 426 445 IPR001246 GO:0016491
Lja3g0620 1783 PRINTS Plant lipoxygenase signature 387 403 IPR001246 GO:0016491
Lja3g0620 1783 PRINTS Plant lipoxygenase signature 204 225 IPR001246 GO:0016491
Lja3g0620 1783 PRINTS Plant lipoxygenase signature 243 259 IPR001246 GO:0016491
Lja3g0620 1783 PRINTS Plant lipoxygenase signature 494 518 IPR001246 GO:0016491
Lja3g0620 1783 PRINTS Plant lipoxygenase signature 340 361 IPR001246 GO:0016491
Lja3g0620 1783 PANTHER LIPOXYGENASE 911 1782 - -
Lja3g0620 1783 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 951 1089 IPR036392 GO:0005515
Lja3g0620 1783 ProSitePatterns Lipoxygenases iron-binding region signature 1. 1436 1450 IPR020833 GO:0016702|GO:0046872
Lja3g0620 1783 Gene3D - 1189 1278 IPR027433 -
Lja3g0620 1783 SMART LH2_4 73 209 IPR001024 GO:0005515
Lja3g0620 1783 SMART LH2_4 954 1086 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0620 Lja-Chr3 6135673 6189514 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0620 151 868 Acyl Lipid Metabolism Gene Families AT3G45140 58.527 0.0 901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0620 K00454 - gmx:100786646 1517.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0620 3 6135673 6189514 Lja3g0620 3 6135673 6189514 ECH