Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0618 ATGAAGATGAAGATGAAGACGATCGTGATGAACGTGCTTTTTTGCCTTTTCTCTCTTCTTGCTACCTCATCCGCCCACGTTGTTGCGCCCATTCTCGACGATTCGGATCTCAACCGGAGCAGTTTCCCGCCAGGTTTCGTTTTCGGAACAGCTTCTGCAGCATACCAGCATGAAGGTGGTGCAAGGGAAGGTGGAAAAGGACCCAGTGTGTGGGATACTTTCACTCATAAACATCCAGAAAAAATAGCAGGTGGAGCTAATGCAGATGTAACTTGCGACCAATATCATCGATATAAGGAGGATGTTGGAATCATGAAGAATATGAACTTGGATGCTTATAGATTCTCCATTTCTTGGGCTAGAGTACTACCAAAAGGAAAGCTTAGCGGAGGTGTAAACCGTGAAGGAGTAAACTACTATAACAACCTCATCAATGAGCTACTGGCTAATGGTGTGAAACCATATGTAACCCTTTACCATTGGGATATTCCTCAAGCCTTAGAAGATGAGTATCGCGGTTTATTGAGCCCTCGCATTGTAAAAGACTTTAGGGACTATGCTGAACTTTGCTTCAAGGAATTTGGTGATAGGGTGAAACATTGGATTACTTTGAATGAACCAAGTAGTGTGAGTCGGCATGCCTATGGAAATGGAAGGTTTGCACCAGGTCGGTGTTCTGCTTGGCTAAAGCTGAACTGCACTGGTGGCGATTCGGGGACAGAGCCATATTTGACTTCGCATTACATGCTTCTTGCTCATGCTGCTGCTGTCAAAGTGTACAAGACCAAGTATCAGGCATCTCAAAAGGGTTTAATAGGGGTTACCATAAATACTGAATGGTTTGTGCCGGCAACTCAAGCGAAATCAGATGTTGATGCTGCACGACGTGCCCTTGACTTCATGTTTGGATGGTATATGGATCCTCTCACAAAAGGTGAATATCCAAAAAGTATGCAATCTTATGTGGGAAAACGGCTACTGAAGTTCACTCAAGAAGAAGCCAAGCTAGTTAAGGGGTCGTTTGATTTTCTGGGCCTAAACTACTACTCATCCTTTTATATTGCCAATGCACCTCACCTACGTGGCGCAGGACCAGCCCAACAATTTGATGCTCTTGTTAATAAAACAAATCAAATAAACGGCAAGGCCATTGGTCCCTTGGCTGCTTCAGACTGGTTATCCATTTATCCGCGAGGATTTCACCAACTATTGCTTTTCATCAAACAGGAGTACAACAATCCTGTAATTTACATTACTGAAAATGGTTATGATGAGTACAACGATCCAACACTATCAATTGAAGAATCCCTCTTGGACACTTACAGAGTTGATTACCTTTATCGTCACCTTTACTATGCTCATAAAGCAATCAAGGATGGTGTGAATATAAAGGGATATTTTGTGTGGTCACTGTTGGATAATATGGAATGGGACTCTGGCTACACTGTGCGATTTGGACTTAACCTTGTGGATTTCAAAAATGGCTTAAAACGATACCCAAAAATCTCAGCCCGTTGGTTCAAGAATTTCCTCAATAAAAATTAG 1545 0.4259 MKMKMKTIVMNVLFCLFSLLATSSAHVVAPILDDSDLNRSSFPPGFVFGTASAAYQHEGGAREGGKGPSVWDTFTHKHPEKIAGGANADVTCDQYHRYKEDVGIMKNMNLDAYRFSISWARVLPKGKLSGGVNREGVNYYNNLINELLANGVKPYVTLYHWDIPQALEDEYRGLLSPRIVKDFRDYAELCFKEFGDRVKHWITLNEPSSVSRHAYGNGRFAPGRCSAWLKLNCTGGDSGTEPYLTSHYMLLAHAAAVKVYKTKYQASQKGLIGVTINTEWFVPATQAKSDVDAARRALDFMFGWYMDPLTKGEYPKSMQSYVGKRLLKFTQEEAKLVKGSFDFLGLNYYSSFYIANAPHLRGAGPAQQFDALVNKTNQINGKAIGPLAASDWLSIYPRGFHQLLLFIKQEYNNPVIYITENGYDEYNDPTLSIEESLLDTYRVDYLYRHLYYAHKAIKDGVNIKGYFVWSLLDNMEWDSGYTVRFGLNLVDFKNGLKRYPKISARWFKNFLNKN* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0618 514 Gene3D Glycosidases 22 513 - -
Lja3g0618 514 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 46 60 IPR033132 -
Lja3g0618 514 PRINTS Glycosyl hydrolase family 1 signature 439 450 IPR001360 GO:0004553|GO:0005975
Lja3g0618 514 PRINTS Glycosyl hydrolase family 1 signature 340 354 IPR001360 GO:0004553|GO:0005975
Lja3g0618 514 PRINTS Glycosyl hydrolase family 1 signature 416 424 IPR001360 GO:0004553|GO:0005975
Lja3g0618 514 PRINTS Glycosyl hydrolase family 1 signature 484 496 IPR001360 GO:0004553|GO:0005975
Lja3g0618 514 PRINTS Glycosyl hydrolase family 1 signature 460 477 IPR001360 GO:0004553|GO:0005975
Lja3g0618 514 Pfam Glycosyl hydrolase family 1 40 514 IPR001360 GO:0004553|GO:0005975
Lja3g0618 514 SUPERFAMILY (Trans)glycosidases 30 512 IPR017853 -
Lja3g0618 514 PANTHER BETA-GLUCOSIDASE, PUTATIVE-RELATED 34 513 - -
Lja3g0618 514 PANTHER GLYCOSYL HYDROLASE 34 513 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0618 Lja-Chr3 6108267 6112844 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0618 5 507 Glycoside Hydrolase AT5G42260 50.493 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0618 - K01188 gmx:100801874 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0618 3 6108267 6112844 Lja3g0618 3 6108267 6112844 ECH