LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g0615	ATGTATCAGATTAACATGGCATCATTATGCAAACTCTTTTACCTTTTGGGACTCGTTGCTAATTTCGTTCTTGTGATTACCAAATCGAATGTTGTTCATTGCACTGAAAATGTTGCTCCCACTCTTGATCTTGTTTCTTTGAACCGAAACAGTTTCCCTCCAGGCTTCATCTTTGGAGCTGGATCCTCCTCGTACCAGTTTGAAGGTGGAGCAATGGAAGGTGGTAGAGGGTCAAGTATATGGGATACCTTCACCCATAAATATCCAGAAAAGATAAAGGATAGAAGTAATGGAGATGTGGCCATTGACACGTATCACAATTACAAGGAAGATGTTAAGATGATGAAAGATATGAACTTAGATTCATACAGATTCTCCATATCTTGGTCAAGAATATTGCCGAAAGGAAAGCTAAGTGGAGGTATAAATCAAGAAGGAATCAACTATTACAACAATTTCATCAATGAGCTATTGGCTAATGGTCTAGAACCATTTGTGACTCTTTTTCATTGGGATCTTCCGCAAGCTTTAGAAGATGAGTATGGTGGCTTCTTAAGCCCTATCATAGTAAAAGATTTTCGAGACTATGCGGAGCTTTGCTTCAAGGAATTTGGCGATAGGGTGAAGCATTGGGTTACTTTGAATGAGCCATGGAGTTATAGCCAAAATAGCTACGCAATGGGGAGGTTTGCACCAGGTCGTTGTTCTGCATGGATGAACACAAATTGCACCGGTGGTGATTCAGCTGTAGAACCTTATTTGGTTTCACACTACCAACTTCTTGCTCATGCAGCTGTTGTTCGTGTGTACAAGACCAAATACCAGGCATCTCAGAAGGGTTTCATAGGCATAACCTTGTTAGCTCATTGGTACCTACCTCTCTCCGACACCAAATATGATCAAAAGGCTGCTGAAAGAGCAATGGACTTCATGTATGGATGGTTTATGGATCCATTAACATTAGGAGAGTACCCCAAAAGCATGAGACATCTTGTTGGAGCACGATTACCAAAGTTCACAACAGAGCAAGCTATGCTATTAAAAGGTTCATTTGATTTTATTGGCCTAAATTATTACTCTTCAGCCTATGCCTCAGATGCACCTCAACTAAGAAATGCCAAACCTAGCTACTTGACAGATTCATTGGTCAATCCTGCATTTGAGCGTGATGGCAAACCCATAGGTATTAAGGTTGCTTCTGATTGGTTATACGTTTATCCAAGAGGAATCCAAGATCTTTTGTTATACACCAAGGAAAAGTACAACAACCCTTTGATTTACATCACTGAAAATGGTATAAATGAATATAATGATCCAACACTTCCAGTTGAGGAATCACTCATGGATATATTCCGAATTGATTATCATTATCGTCATCTCTTTTATCTTCGATCTGCAATTAGAAACGGTGTGAATGTCAAGGGATATTATGTATGGTCTTTGTTTGACAACTTTGAGTGGTCCTCTGGTTACACTGTACGATTTGGAATGACCTTTGTGGATTACAAAAATGGCTTGAAAAGATATGAGAAACTTTCTGCATTATGGTTCAAGGACTTCCTCAAAAGAGAAACTAGACTTTATGCTTCTAGTGAATAA	1599	0.3915	MYQINMASLCKLFYLLGLVANFVLVITKSNVVHCTENVAPTLDLVSLNRNSFPPGFIFGAGSSSYQFEGGAMEGGRGSSIWDTFTHKYPEKIKDRSNGDVAIDTYHNYKEDVKMMKDMNLDSYRFSISWSRILPKGKLSGGINQEGINYYNNFINELLANGLEPFVTLFHWDLPQALEDEYGGFLSPIIVKDFRDYAELCFKEFGDRVKHWVTLNEPWSYSQNSYAMGRFAPGRCSAWMNTNCTGGDSAVEPYLVSHYQLLAHAAVVRVYKTKYQASQKGFIGITLLAHWYLPLSDTKYDQKAAERAMDFMYGWFMDPLTLGEYPKSMRHLVGARLPKFTTEQAMLLKGSFDFIGLNYYSSAYASDAPQLRNAKPSYLTDSLVNPAFERDGKPIGIKVASDWLYVYPRGIQDLLLYTKEKYNNPLIYITENGINEYNDPTLPVEESLMDIFRIDYHYRHLFYLRSAIRNGVNVKGYYVWSLFDNFEWSSGYTVRFGMTFVDYKNGLKRYEKLSALWFKDFLKRETRLYASSE*	533

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g0615	532	Pfam	Glycosyl hydrolase family 1	49	524	IPR001360	GO:0004553\|GO:0005975
	Lja3g0615	532	ProSitePatterns	Glycosyl hydrolases family 1 N-terminal signature.	56	70	IPR033132	-
	Lja3g0615	532	SUPERFAMILY	(Trans)glycosidases	40	522	IPR017853	-
	Lja3g0615	532	Gene3D	Glycosidases	38	523	-	-
	Lja3g0615	532	ProSitePatterns	Glycosyl hydrolases family 1 active site.	426	434	IPR018120	-
	Lja3g0615	532	PANTHER	GLYCOSYL HYDROLASE	11	528	IPR001360	GO:0004553\|GO:0005975
	Lja3g0615	532	PANTHER	GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN	11	528	-	-
	Lja3g0615	532	PRINTS	Glycosyl hydrolase family 1 signature	449	460	IPR001360	GO:0004553\|GO:0005975
	Lja3g0615	532	PRINTS	Glycosyl hydrolase family 1 signature	350	364	IPR001360	GO:0004553\|GO:0005975
	Lja3g0615	532	PRINTS	Glycosyl hydrolase family 1 signature	470	487	IPR001360	GO:0004553\|GO:0005975
	Lja3g0615	532	PRINTS	Glycosyl hydrolase family 1 signature	494	506	IPR001360	GO:0004553\|GO:0005975
	Lja3g0615	532	PRINTS	Glycosyl hydrolase family 1 signature	426	434	IPR001360	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g0615	Lja-Chr3	6087643	6091780	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g0615	22	526	Glycoside Hydrolase	AT5G44640	53.557	0.0	572

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g0615	-		K01188	gmx:100802250	906.746