Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0610 ATGTTGGTCGTTTCCGCTCCTCCTCCCTTGTCTGGTTTGAGGAGAATCCAAGCTTTGATCATGTCTGAGACACCACGACGATCTTACAAAGCTTCTCTCAGCAATACCAACACACCCACCTCGCTTGTTGAAGGCTCTGATTCCTCCAACGCCGCTTCTTCAGTGTCCCAACTTCGTGTCTTTGTGAGAAAAAACAAGAGACCCAGAAAAATGACTATGGAACTTCAACAAAAGGAGCCTCCTCCACCAACCCAGGACCATAAAAAGCTTGGTCCACCTGAAATTGAAGACTTTGCATACAGTGGAGCAAATGTGGCTGAGTGCAGAAAAACAGAATCGGTCTCAGATGTGGTCCTAGCAGAAGTTGCTTCTCCAACACCCAGCGGTGAATTACCTGCTCACTGGGAAAAGGTGCTTGAGGGGATTCGCAAAATGAGGTGTTCTGCAGAAGCACCGGTAGACACTATGGGATGTGAGAAAGCTGGAAATACTCTACCTCCTAAGGAAAGAAGATTCGCTGTCCTGGTATCTTCTCTTTTATCAAGTCAAACCAAGGATCATGTTAATCATGGAGCAATCCAACGTCTACTTCAAAATGATTTGCTTACGGCTGATGCAATCAACAATGCTGATGAAGAAACCATCAAAAAGTTGATTTACCCTGTTGGGTTTTATACAAGAAAAGCTACTAACTTGAAAAAAATTGCAAATATTTGTCTCATGAAGTATGACGGAGACATACCTAACTCACTTGAGCAACTACTTTTACTTCCAGGCATAGGTCCTAAGATGGCACATTTGGTTATGAATGTTGGATGGAACAATGTCCAAGGCATATGTGTAGATACTCATGTCCACCGCATTTGCAATAGGCTTGGGTGGGTGTCAAGATTGGGCACAAAACAGAAAACTTTGACACCTGAACAGACACGAGAGGCACTGCAAAGGTGGCTTCCAAGGGAAGAATGGGATCCCATAAATCCTCTATTGGTTGGATTTGGACAGACAATTTGTACACCTCTAAGACCTCGTTGTGGAGAATGTGGCATAAGTGAGTTATGTCCATCAGCGTTCAAGGAGACCTCAAACTCAAGCCCTTCTTCCAAGTCCAGAAAGTCCAGACTCAACAAGAAGAAGCTTTAA 1143 0.4409 MLVVSAPPPLSGLRRIQALIMSETPRRSYKASLSNTNTPTSLVEGSDSSNAASSVSQLRVFVRKNKRPRKMTMELQQKEPPPPTQDHKKLGPPEIEDFAYSGANVAECRKTESVSDVVLAEVASPTPSGELPAHWEKVLEGIRKMRCSAEAPVDTMGCEKAGNTLPPKERRFAVLVSSLLSSQTKDHVNHGAIQRLLQNDLLTADAINNADEETIKKLIYPVGFYTRKATNLKKIANICLMKYDGDIPNSLEQLLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSRLGTKQKTLTPEQTREALQRWLPREEWDPINPLLVGFGQTICTPLRPRCGECGISELCPSAFKETSNSSPSSKSRKSRLNKKKL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0610 380 SUPERFAMILY DNA-glycosylase 144 367 IPR011257 GO:0003824|GO:0006281
Lja3g0610 380 CDD ENDO3c 172 334 IPR003265 GO:0006284
Lja3g0610 380 Pfam Helix-hairpin-helix motif 242 270 IPR000445 GO:0003677
Lja3g0610 380 MobiDBLite consensus disorder prediction 24 90 - -
Lja3g0610 380 SMART endo3end 180 336 IPR003265 GO:0006284
Lja3g0610 380 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 92 374 - -
Lja3g0610 380 Gene3D - 270 360 IPR023170 -
Lja3g0610 380 MobiDBLite consensus disorder prediction 27 60 - -
Lja3g0610 380 Hamap Endonuclease III-like protein 1 [NTHL1]. 131 360 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Lja3g0610 380 ProSitePatterns Endonuclease III family signature. 245 274 IPR004036 -
Lja3g0610 380 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 92 374 - -
Lja3g0610 380 Pfam HhH-GPD superfamily base excision DNA repair protein 176 314 IPR003265 GO:0006284
Lja3g0610 380 MobiDBLite consensus disorder prediction 358 380 - -
Lja3g0610 380 SMART ccc3 337 357 IPR003651 GO:0051539
Lja3g0610 380 Gene3D Hypothetical protein; domain 2 158 269 - -
Lja3g0610 380 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 338 354 IPR004035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0610 Lja-Chr3 6028346 6038335 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0610 K10773 - gmx:100818398 514.612