Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0601 ATGGCTGCTTCTTCCTTGTTTCGCTGCATTCGTAGAGCTTCCTCTGTTCTCAGATTCTCGTATGCTGCATCGTTTTCCGTGTCTCCCAGGTTAGTTGGGAGGACTCAAATGTCTATGTGTTCTTCATTGAGACATTGCTTTGAGGATCGAGGTTGTTCTTGGTGGGGTGTTAGAAATTTGAGTCATGGCACGATTAATCTTGTGATAAGTGGGGGGAAGACCAAGTTTGAGGCTGAGGAGGTTGAGTCTCCGAAGAAAGATAAGTATACGACGAAGAAGAGGCTGAAGATGCAGAGGAAGAGAGAGAAGGAGAAGAGGAAAGCTGCTAATAGGAGAGATCCTCGCCGGCTTGGTGTTAAAGGGAAGAAGAAGAAGAAGTTTGATAGTCCAGAAGAGAGGATCAAGTGTAAGATTGAAAAGGCCAGAGTCAAGGAAGCCATGCTCATTGAAAGACTTAAACGATATGAAGTTCCTAAAGCTCAGGGTCCTGTTGCAAAACCAGATGGCTTGACAGGGGAGGAACGGTTTTATCTGAAGAAAATGGCTCAGAAAAGTTCTAATTATTTACAAGTTGGCAGAAGAGGATTATTTGGAGGGGTTATTCTCAATATGCATATGCATTGGAAGAAACACGAGACTGTTAAGTGCATATGCAAGCCTTGTAAACCTGGTCAAGTACATGAGTATGCACAAGAACTTGCCAGACTGAGTGGTGGTATTCCGATTCACATTATTGGAGATGACACTATAATATTTTATCGCGGAAAGAACTATGTACAGCCTGATGTTATGTCACCAATAGATACATTATCCAAAAAGAAGGCACTGGAAAAATCCAAGTATGAGCAATCACTTGAGTCAGTGAGGCGCTTCATTGCTATTGCTGAGAAAGAATTAGAACTATATTACCGGCACGTTGCTCTTTATGGTGACCCAAACGACCGTAATCCGTTGTCAATGCTGGACAGTCGAAGCAAAAATTTTGGGCAAAAAGGGAACCATGGAATTCATGATGGAAGAAAGCTTGATTTGAGTAGTGATCATTTTTCAGCTAATCTTTCGGAGACAGAAGCAGATTCCTCGGAGATGGAGCTATCAGGAACTGAAGATAATTCTGAAAATGAAGACTTGTCAATGAATGAATCAGATTCTGAAGAGGAAAGCATATCTTATTCTGATGATGAACAAGGAAGAGAGGTATATTTTACTAAAAGGCAAGGTGAAAGTATATGTTCGACCACAGGTTCATCTTCAATGTCTGAACATAGCCACCGTTATAATAATCATCATTTATCATCCCGTTAA 1305 0.4123 MAASSLFRCIRRASSVLRFSYAASFSVSPRLVGRTQMSMCSSLRHCFEDRGCSWWGVRNLSHGTINLVISGGKTKFEAEEVESPKKDKYTTKKRLKMQRKREKEKRKAANRRDPRRLGVKGKKKKKFDSPEERIKCKIEKARVKEAMLIERLKRYEVPKAQGPVAKPDGLTGEERFYLKKMAQKSSNYLQVGRRGLFGGVILNMHMHWKKHETVKCICKPCKPGQVHEYAQELARLSGGIPIHIIGDDTIIFYRGKNYVQPDVMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSMLDSRSKNFGQKGNHGIHDGRKLDLSSDHFSANLSETEADSSEMELSGTEDNSENEDLSMNESDSEEESISYSDDEQGREVYFTKRQGESICSTTGSSSMSEHSHRYNNHHLSSR* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0601 434 MobiDBLite consensus disorder prediction 80 128 - -
Lja3g0601 434 MobiDBLite consensus disorder prediction 406 422 - -
Lja3g0601 434 SUPERFAMILY YhbY-like 170 263 IPR035920 -
Lja3g0601 434 MobiDBLite consensus disorder prediction 314 434 - -
Lja3g0601 434 MobiDBLite consensus disorder prediction 362 390 - -
Lja3g0601 434 Coils Coil 92 112 - -
Lja3g0601 434 MobiDBLite consensus disorder prediction 347 361 - -
Lja3g0601 434 MobiDBLite consensus disorder prediction 331 345 - -
Lja3g0601 434 Gene3D - 170 267 IPR035920 -
Lja3g0601 434 PANTHER GROUP II INTRON SPLICING FACTOR CRS1-LIKE 5 392 - -
Lja3g0601 434 ProSiteProfiles CRM domain profile. 168 265 IPR001890 GO:0003723
Lja3g0601 434 MobiDBLite consensus disorder prediction 90 106 - -
Lja3g0601 434 Pfam CRS1 / YhbY (CRM) domain 170 254 IPR001890 GO:0003723
Lja3g0601 434 PANTHER GROUP II INTRON SPLICING FACTOR CRS1-LIKE 5 392 IPR040286 -
Lja3g0601 434 SMART CRS1_YhbY_2 170 254 IPR001890 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0601 Lja-Chr3 5917448 5920623 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0601 - - gmx:100796393 546.969