Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0596 ATGATGGGGTTGGAAACGGTGGTTGATTTGGCGATTCACGATGTTCTGAGGAGGCTCAGCCCTGAAGACATTGCCAGAGTCGCATGTGTGAGCAAGAAGTTGAGGTCTCTAGCCTTCGATGATGACTCTCTTTGGCTCACAATCTGCATCAGTGAACTCGATTTGCATCAGCCTCTTGATCATCTCGGAAACCCTCTTCCTTCCTTCAAGGCAACTTATCAAGCTTGGAGAGAAGCTTTTGCTATGTATCCTTGGTCTCTTGTTAAGCGTGTAAAACAGTGCTGGGACAAATTAAAGACCTGGCTGGTTAATAATTTTCCAGAAGCTGAGGCCACTCTTTGTAAAGGTGCATCTGAAGCTGAGATACTAGAGTTGGAGAATGTCTTAGAAGTGAAATTACCTCTTCCTACAAGGATCCTTTACCGCTTTCATAACGGGCAAGAAATTGCAAATGGAGATCTAGAATCTGATACATTTGGCAGTTCATTGGGTCTAATTGGTGGCTACTCCTTCTATAGTCATTTGGTAAATGTTTATCTATTACCTATACGTCAGGTAATCCTAGAAACTCAGAACTTAACCCGTCACTTAGGCTTTTTAAGAAGATCCAAGTATGTTCTTGTGGCTGCTTCGTCCACACAAAATGAGAAGTTGTTTTTCCTCAACTGTATCGATGGTCAACTGTATGTCGGAACCAGGACTTTTTTTACCAGTGAAGACTTGATCCCTTGTGTACCTCATAATCTGATTAGTTTGCACGGGTTGAATAATGAACAGCAACAAGATGCCATGCTACTATGGTTTGAAGAACATGGTCGCCGTTTACAACAGGGCTTTATCAAACTTCATGAAGAGGGAAATAACAGAAGCATTAATCTTTTCCCAGAAGAACCCCCTCTTTGTTCAACGGCTATAACCAATGGCGTGCAGGTTCGAGCTTCTGCATTGTTTGTCCCGGAGTTGTCTGATCTTCAAGATGACCTTGAAAAGTACTTATTTGCTTATTCAATCCGCATGTCCCTACATCCTGAAGGATGCATCATCAATGGAATGTCCTTCAGCTCTTGTCAGCTACATTGGAGGCATTGGATCATCCGTGCTAATGATATTGTAGTATCTGATGTCAATGGAGAAGCTGTTATAGGAATGTTCCCACTTTTACGTCCAGGTGCTGAAGAATTTGTTTATCAGAGTTGCACATATCTTCCAACATCATCAGGTTCCGTCGAAGGCTCTTTTACATTTGTACCTGGCAGATTGGCAAACCCAAAAGGAGACTCTTTCCTAGCCACAGTGGACCGCTTCCCTATTCAGCTTCCAGACTATATTTTCTGA 1335 0.4262 MMGLETVVDLAIHDVLRRLSPEDIARVACVSKKLRSLAFDDDSLWLTICISELDLHQPLDHLGNPLPSFKATYQAWREAFAMYPWSLVKRVKQCWDKLKTWLVNNFPEAEATLCKGASEAEILELENVLEVKLPLPTRILYRFHNGQEIANGDLESDTFGSSLGLIGGYSFYSHLVNVYLLPIRQVILETQNLTRHLGFLRRSKYVLVAASSTQNEKLFFLNCIDGQLYVGTRTFFTSEDLIPCVPHNLISLHGLNNEQQQDAMLLWFEEHGRRLQQGFIKLHEEGNNRSINLFPEEPPLCSTAITNGVQVRASALFVPELSDLQDDLEKYLFAYSIRMSLHPEGCIINGMSFSSCQLHWRHWIIRANDIVVSDVNGEAVIGMFPLLRPGAEEFVYQSCTYLPTSSGSVEGSFTFVPGRLANPKGDSFLATVDRFPIQLPDYIF* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0596 444 PANTHER F-BOX PROTEIN SKIP16 2 444 - -
Lja3g0596 444 Gene3D ApaG domain 301 443 IPR036767 -
Lja3g0596 444 Gene3D - 7 99 - -
Lja3g0596 444 ProSiteProfiles ApaG domain profile. 303 444 IPR007474 -
Lja3g0596 444 SUPERFAMILY ApaG-like 305 444 IPR036767 -
Lja3g0596 444 SUPERFAMILY SMI1/KNR4-like 94 198 IPR037883 -
Lja3g0596 444 SUPERFAMILY F-box domain 12 80 IPR036047 GO:0005515
Lja3g0596 444 Pfam F-box-like 14 51 IPR001810 GO:0005515
Lja3g0596 444 ProSiteProfiles F-box domain profile. 1 48 IPR001810 GO:0005515
Lja3g0596 444 Pfam ApaG domain 325 416 IPR007474 -
Lja3g0596 444 PANTHER F-BOX PROTEIN SKIP16 2 444 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0596 K10290 - gmx:100778108 712.99