Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0590 ATGGGTAACACCAATCTTGTTCAACTCCTGCTTCTACTTCTTCTAACTCTTCACTCTTCCTTCGCCGAGGTTTTTTTTGAAGAGAGATTCGAAGATGGATGGAAGAGCCGTTGGGTTTTGTCAGATTGGAAAAGGAGTGAAGGAAAGGCGGGTACTTTTAAGTACACGGCAGGAAAATGGCCTGGAGATCCTGATGATAAAGGTCTACAGACATATAATGACGCAAAACATTTTTCCATATCTGCAAAGATTCCAGAGTTAAGCAATAAGAACAAGACCCTGGTGGTCCAGTATTCTATTAGATTTGAGCAGGACATCGAGTGTGGTGGTGGTTACATCAAACTTCTTTCTGGTTATGTTAATCAGAAAAAGTTTGGTGGTGATACGCCTTATAGTTTCATGTTTGGACCAGACATATGTGGCACACAGACTAAGAAGCTCCATGTTATACTGTCCTACCAGGGCCAGAATTATCCTATCAGAAAAGATTTGCAATGTGAAACAGACAAATTAACTCATTTCTATACATTTATACTAAGGCCTGATGCTACTTATAGTGTCCTTGTTGATAATCGAGAAAGAGATTCTGGAAGCATGTACACAGATTGGGACATCCTTCCTCCAAGGAAAATCAAAGATGTCAAAGCAAAAAAGCCAGCAGACTGGGATGATAGAGAGTACATTGAAGACCCTAATGCTGTCAAACCAGAGGGATATGATTCAATTCCAGCTGAAATTCCTGATCCAAAAGCCAAGAAGCCTATTGACTGGGATGATGAAGATGATGGACTTTGGAAGGCCCCCAAAATTCCTAATCCAGCATACAAAGGACCGTGGAAACGCAAGAAAGTCAAGAACCCCAACTACAAGGGAAAGTGGAAAACTCCATGGATTGATAACCCAGAATTTGAAGACGACCCTGATCTTTATGTGCTGAGACCAATAAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAGGCCGGTTCAATTTATGACAATATCTTAATTTGTGATGACCCACAGTATGCAAAGCAAATTGTGGAAGAATATATGGTTAATTATAGAGAGGCTGAAAAAGAAGCTTTCGAAGAAGCAGAAAAAGAAAGAAAGGCTCGGGAAGAAGAGGAGGCCCAGAGAGCAAGAGAAGAGGGTGAAAAGAGGAGGAGAGAGAGGGATCATAAATACGGAGATAGGAGGCGCCGTAGAAGGCCGGATCCCCACGATTACATGGATGATTACCATGATGAACTCTGA 1254 0.4187 MGNTNLVQLLLLLLLTLHSSFAEVFFEERFEDGWKSRWVLSDWKRSEGKAGTFKYTAGKWPGDPDDKGLQTYNDAKHFSISAKIPELSNKNKTLVVQYSIRFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSFMFGPDICGTQTKKLHVILSYQGQNYPIRKDLQCETDKLTHFYTFILRPDATYSVLVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWDDREYIEDPNAVKPEGYDSIPAEIPDPKAKKPIDWDDEDDGLWKAPKIPNPAYKGPWKRKKVKNPNYKGKWKTPWIDNPEFEDDPDLYVLRPIKYVGIEVWQVKAGSIYDNILICDDPQYAKQIVEEYMVNYREAEKEAFEEAEKERKAREEEEAQRAREEGEKRRRERDHKYGDRRRRRRPDPHDYMDDYHDEL* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0590 417 SUPERFAMILY Concanavalin A-like lectins/glucanases 19 221 IPR013320 -
Lja3g0590 417 MobiDBLite consensus disorder prediction 231 253 - -
Lja3g0590 417 Gene3D - 23 379 - -
Lja3g0590 417 PRINTS Calreticulin signature 103 121 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja3g0590 417 PRINTS Calreticulin signature 284 303 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja3g0590 417 PRINTS Calreticulin signature 129 145 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja3g0590 417 PRINTS Calreticulin signature 218 231 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja3g0590 417 PRINTS Calreticulin signature 246 268 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja3g0590 417 PRINTS Calreticulin signature 317 337 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja3g0590 417 MobiDBLite consensus disorder prediction 399 417 - -
Lja3g0590 417 ProSitePatterns Calreticulin family signature 1. 101 116 IPR018124 GO:0005509
Lja3g0590 417 MobiDBLite consensus disorder prediction 362 392 - -
Lja3g0590 417 Pfam Calreticulin family 263 336 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja3g0590 417 Pfam Calreticulin family 27 261 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja3g0590 417 SUPERFAMILY P-domain of calnexin/calreticulin 204 319 IPR009033 GO:0005509|GO:0005515
Lja3g0590 417 Coils Coil 354 392 - -
Lja3g0590 417 MobiDBLite consensus disorder prediction 362 417 - -
Lja3g0590 417 PANTHER CALRETICULIN AND CALNEXIN 7 417 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja3g0590 417 PANTHER CALRETICULIN-3 7 417 - -
Lja3g0590 417 PIRSF Calreticulin 3 412 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja3g0590 417 Gene3D Calreticulin/calnexin, P domain 208 309 IPR009033 GO:0005509|GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0590 Lja-Chr3 5788816 5795742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0590 1 344 Miscellaneous Gene Families AT5G61790 35.396 2.50e-65 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0590 K08057 - gmx:100802428 707.983