Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0579 ATGGAAACATTTGAGTTCCTTAATATTTTGCAAGTTCACGGGTTCCCGAAAGTCATGGGGGTTCTTACACATCTTGATAAATTCAAGGATGTTAAAAAGTTGAGGAAAACCAAGCAACGGCTCAAACACCGCTTTTGGACTGAAATATATGATGGTGCTAAGTTGTTTTACTTATCAGGCCTTATTCATGGAAAGTATGTCAAGCGTGAAGTTCACAATCTTGCTCGATTTATTTCGGTCATGAAGTTTCATCCTTTATCTTGGAGAACTTCCCACCCTTATGTTTTGGCAGATCGTTTTGAAGATATCACTCCTCCTGAAAAAGTGCATTCAAATAATAAATGTGATAGAAAAATCACACTTTATGGTTATCTCAGAGGCTGTAATTTGAAAAAGGGCAATAAGGTGCACATAGCTGGGGTCGGTGATTATAGTTTAGCTGGTGTTACTGCTTTACCTGATCCATGTCCTCTTCCATCTGCTGCCAAAAAGAAGGGACTGCGTGATAAGGAGAAATTATTCTATGCTCCAATGTCTGGCCTTGGGGATCTCTTGTACGACAAAGATGCTGTATACATAAATATTAATGATCACTTTGTTCAATTCTCAAAAGTGGATGATGAAAACTCTGCTATTACGAGAAAAGGAAATGAAAGAGATATAGGAGAAGTTTTGGTGAGATCGCTTCAGGAAACCAAGTACCCAATCAATGAAAAGCTGGAGAATAGCATGATCAATCTTTTTGCTCAATCTTCAGAAGCTCTAGCTGAGGCTCAGGGTACAAACATGGATGTCGAGCAAGATGGCATAATAGAGACTGTGGATTATAACGAGATGGATTCAGATGGTGGTTCAGAATCATCTGATCAGGATGAAGCTGATGCCATGACAGGTTCAGGATTACCCGACCAAGCTGAAGACGATGCAGCGGGTGACAAATCTACAAACAAAGACCACTTAGAAGAACATATTGAGTTTCACAATGGAAGAAGAAGGAGAAGAGCAATCTTCGGTAATGATGCTGATCAAAGTGATCTGATGGATTCATCAGGAAATGAGGATGGTTCTGCCAGTGATGATGGGGCATCTTCTGATTCAGAATCTTTAAACGAAGAGGAGGAAGATGATGACATGGGAAATGTTTCAAAGTGGAAAGAGTCTTTGGCTGAAAGAACACTCTCACAGAAAACTCCTAGTTTGATGCAACTGGTCTATGGGGAATCTACTGCTAATTTAATATCTATAAACAAAGAGAATGATAGTAGCGAAGATGAGGAAAGTGATGGTGACTTTTTTGAGCCTATAGAAGAAGTGAAAAAGAAAAATGTGAGAGATGGATTTAATGATGGAAACGTCAACACTGAGGATTATTCCAAGTGCGCACAATTTATGGATAAGAGATGGGATAAGAAAGATAATGAGGAGATTCGCAACCGTTTTGTGACTGGAAATTTGGCAAAAGCAGCACTCAGAAATGGACTACCAAAGGCTACTACTGAAGAGGAAAATGATGATGTCTATGGGGACTTTGAAGATTTAGAAACAGGAGAAAAAATTGAGAATAATCAAACAGATGATACGACACACAATGGAGATGATTTGGAAGCAGAGACGCGGAGGCTTAAGAAACTTGCTCTTCGTGCAAAATTTGATTCTCGATTTGATGATGACCCTGGGACACCAGAGGAAGATGGTGGTAATGAAAATGAAGCCAAGTTTCGTCGAGGTCAGCCTAATGAAACCAGCTACTTTGACAAGTTGAAGGAGGAGATAGAGCTCCAGAAACAAATGAATATTGCTGAACTGAACGATCTTGATGAGGCTACCAGATTGGAGATAGAGGGTTTCCGAACAGGGACATACGTAAGATTGGAGGTCCATGATGTTCCTTGCGAGATGGTTGAATACTTTGATCCCTACCATCCAATATTGATTGGAGGAGTCGGTTTAGGGGAGGAAAATGTTGGATACATGCAGGCCAGGTTAAAGCGACACAGGTGGCATAAGAAAGTCCTGAAGACTAGAGACCCAATTATTGTTTCTGCTGGATGGAGGCGTTACCAGACAACTCCTGTATATGCTATTGAGGATCACAATGGAAGGCACCGTATGCTGAAATACACTCCAGAACACATGCATTGCCTAGCTATGTTTTATGGTCCTCTTGCTCCTCCCAACACCGGAATAGTCGCTGTTCAGAATTTATCAAACAATCAGGCAACATTTAGGATTACTGCAACTGCAGTTGTACTTGAGTTTAATCATGCAGCAAGGATAGTGAAAAAAATCAAATTGGTCGGTTACCCATGCAAGATATTCAAGAAGACAGCTCTTATCAAGGAAATGTTTACTTCGGATCTTGAAATAGCTCGGTTTGAAGGTGCGGCCATTCGAACAGTCAGTGGGATAAGGGGGCAGGTCAAGAAGGCTGCAAAAGAAGAGATAGGTAACCAACCAAAAAGGAAGGGTGGGATAACCAAAGAAGGAATTGCTAGGTGCACCTTTGAGGACAAAATTTTGATGAGTGACATTGTTTTCCTGCGTGCATGGACTCAAGTTGAAGTTCCTCAGTTCTATAATCTGTTGACAACGGCACTGCAGCCTCGTGACCAGACCTGGAAAGGAATGAGAACTGTTGCAGAATTGAGAAGAGACCACGATCTTCCTGTGCCTGTAAACAAAGATTCTCTTTACAAGAAAATTGAAAGAAAACCTAGAAAGTTCAATCCATTGGTGGTTCCTAGGAGTCTACAGGAAAGACTTCCTTTCGCATCCAAACCCAAGGAGACACCCAAGCGAAACCAGCCATTACTTGAACAGAGAAGGCAAAAGGGTGTTGTCATGGAACCTCGTGAGCGAAAAGTTCTTGCTCTTGTTCAGCACATCCAGTTAATAAATCATGACAAGATGAAAAAGCGAAAACTTAAGGAAAACGAAAAGAGGAAAGCACATGAAGCAGAAAAAGCAAAAGAAGAGCTGTTGTCGAAAAAGCGCCGGAGAGAAGAAAGACGAGAGAAGTACCGGACACAAGACAAGTCGAGTAAGAAAATGCGGAGATCAGAGGCTTGA 3069 0.4125 METFEFLNILQVHGFPKVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLADRFEDITPPEKVHSNNKCDRKITLYGYLRGCNLKKGNKVHIAGVGDYSLAGVTALPDPCPLPSAAKKKGLRDKEKLFYAPMSGLGDLLYDKDAVYININDHFVQFSKVDDENSAITRKGNERDIGEVLVRSLQETKYPINEKLENSMINLFAQSSEALAEAQGTNMDVEQDGIIETVDYNEMDSDGGSESSDQDEADAMTGSGLPDQAEDDAAGDKSTNKDHLEEHIEFHNGRRRRRAIFGNDADQSDLMDSSGNEDGSASDDGASSDSESLNEEEEDDDMGNVSKWKESLAERTLSQKTPSLMQLVYGESTANLISINKENDSSEDEESDGDFFEPIEEVKKKNVRDGFNDGNVNTEDYSKCAQFMDKRWDKKDNEEIRNRFVTGNLAKAALRNGLPKATTEEENDDVYGDFEDLETGEKIENNQTDDTTHNGDDLEAETRRLKKLALRAKFDSRFDDDPGTPEEDGGNENEAKFRRGQPNETSYFDKLKEEIELQKQMNIAELNDLDEATRLEIEGFRTGTYVRLEVHDVPCEMVEYFDPYHPILIGGVGLGEENVGYMQARLKRHRWHKKVLKTRDPIIVSAGWRRYQTTPVYAIEDHNGRHRMLKYTPEHMHCLAMFYGPLAPPNTGIVAVQNLSNNQATFRITATAVVLEFNHAARIVKKIKLVGYPCKIFKKTALIKEMFTSDLEIARFEGAAIRTVSGIRGQVKKAAKEEIGNQPKRKGGITKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNLLTTALQPRDQTWKGMRTVAELRRDHDLPVPVNKDSLYKKIERKPRKFNPLVVPRSLQERLPFASKPKETPKRNQPLLEQRRQKGVVMEPRERKVLALVQHIQLINHDKMKKRKLKENEKRKAHEAEKAKEELLSKKRRREERREKYRTQDKSSKKMRRSEA* 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0579 1022 MobiDBLite consensus disorder prediction 969 1022 - -
Lja3g0579 1022 MobiDBLite consensus disorder prediction 919 946 - -
Lja3g0579 1022 Coils Coil 967 1010 - -
Lja3g0579 1022 MobiDBLite consensus disorder prediction 339 386 - -
Lja3g0579 1022 Gene3D - 1 84 IPR027417 -
Lja3g0579 1022 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 533 854 IPR007034 -
Lja3g0579 1022 SMART aarp2cn2 70 156 IPR012948 GO:0005634|GO:0042254
Lja3g0579 1022 PANTHER BNAC08G44910D PROTEIN 1 1014 - -
Lja3g0579 1022 MobiDBLite consensus disorder prediction 552 580 - -
Lja3g0579 1022 MobiDBLite consensus disorder prediction 415 437 - -
Lja3g0579 1022 SMART DUF663_2 524 853 IPR007034 -
Lja3g0579 1022 Pfam AARP2CN (NUC121) domain 70 155 IPR012948 GO:0005634|GO:0042254
Lja3g0579 1022 MobiDBLite consensus disorder prediction 343 364 - -
Lja3g0579 1022 MobiDBLite consensus disorder prediction 932 946 - -
Lja3g0579 1022 MobiDBLite consensus disorder prediction 979 1022 - -
Lja3g0579 1022 PANTHER RIBOSOME BIOGENESIS PROTEIN 1 1014 IPR039761 GO:0042254
Lja3g0579 1022 MobiDBLite consensus disorder prediction 277 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0579 Lja-Chr3 5684112 5691725 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0579 K14569 - gmx:100810906 1597.41