Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0576 ATGGGGAATAAGTTACTGAACATTCATGCTCCACGATTTGCGGTAGCCTTTGTCATGATGATGATGATGGTTCCCAAATTTGTGAGAGCCCAAAGTTCAGTAGCTGACATAGTCACACCAGAGTTCTTCAATGGCATAATTGATCAGGCTGATGCTAGTTGTGCAGGGAAGAATTTCTACTCACGAGATGCTTTCCTCAATGCTCTCAATTCCTACAACCAATTCGGTAGCCTTGACTCTTTGGATGATTCTAAGCGTGAGATTGCAGCTGCTTTTGCCCACTTCACCCATGAAACAGGACATTTTTGCTACATAGAAGAGATTGATGGCGCATCAAAGGACTATTGTGACGAAACCAACACTGAATACCCTTGTGCACCTAACAAAGGCTATTATGGGCGTGGACCAATCCAACTATCATGGAACTTCAATTATGGACCAGCAGGGAAGAGCAACGATTTCGATGGATTGAATGCTCCAGAGACAGTGGCCAATGACCCTGTTGTGTCCTTCAAGACAGCACTGTGGTACTGGATGCAATTTGTGCGCCCTGTCTTGAGCCAAGGGTTTGGTGCAACCATTAGAGCTATCAATGGCCAACTTGAATGTGATGGTGCGAACTCCAACACAGTTCAAGCTCGAGTTAATTACTATACCCAATATTGTTCACAACTCGGTGTTGCTCCTGGGGATAATCTTACTTGCTAA 708 0.4463 MGNKLLNIHAPRFAVAFVMMMMMVPKFVRAQSSVADIVTPEFFNGIIDQADASCAGKNFYSRDAFLNALNSYNQFGSLDSLDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDETNTEYPCAPNKGYYGRGPIQLSWNFNYGPAGKSNDFDGLNAPETVANDPVVSFKTALWYWMQFVRPVLSQGFGATIRAINGQLECDGANSNTVQARVNYYTQYCSQLGVAPGDNLTC* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0576 235 CDD chitinase_GH19 38 235 - -
Lja3g0576 235 Gene3D Endochitinase, domain 2 106 163 - -
Lja3g0576 235 Gene3D - 32 235 - -
Lja3g0576 235 PANTHER ENDOCHITINASE EP3-LIKE 15 235 - -
Lja3g0576 235 PANTHER CHITINASE-RELATED 15 235 - -
Lja3g0576 235 SUPERFAMILY Lysozyme-like 33 235 IPR023346 -
Lja3g0576 235 ProSitePatterns Chitinases family 19 signature 2. 169 179 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lja3g0576 235 PIRSF Endochitinase 9 235 IPR016283 GO:0004568|GO:0005975
Lja3g0576 235 Pfam Chitinase class I 37 180 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lja3g0576 235 Pfam Chitinase class I 188 235 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lja3g0576 235 ProSitePatterns Chitinases family 19 signature 1. 54 76 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0576 Lja-Chr3 5670633 5671581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0576 33 235 Glycoside Hydrolase AT3G54420 79.310 1.57e-120 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0576 K01183 - gmx:100527091 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0576 3 5670633 5671581 Lja3g0576 3 5670633 5671581 ECH