LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g0562	ATGGCTTCACTTCTGAAAAAACTGCGACCTGGTGTTGTGCCTGCAATTCATGATGATAGTGGTGATTTTAGCTATGAGTACTCCTTTGCAGAGGAGTACAAAGGCCCTCCTATCAGATACTCCATTCCTGAAGCACCTCCTTTCAACCTTGATAAAATCCCACTTGCTCCTCTTGCTCCTTCTCCCCCTCTTGATCACTCCTCACTCCCAATTATCCAACCTTTCAGAAAAACCAATGCTAGTAGTACAAATCCCAAACTCCCTATAGTTCCTCTTCCTGATCTTGAAGTTGAACAAGAGACAGGATTTCATGTTTTTATTCCAAGTAATTCTGACACAACACAATCAGGTTCAACATCAAGCTTTAGTCCTGTTTCTTGTGAGATAGTTCCATGCATGGAAGATGATTGTGAAAATATCCCAGCTACTCCAAGACATGTCAGAAGGCCTTCAGCTGTGACTTTTCGTGAGCCTCAGTCAAATGACATGGTGGATGATGAAGAGTTTGTTGATTCTCAAGGTGGGGGATTCATGGCTTCGGCCAAGAACAATGTGAGACCGCGTGCTGTTAGAGAGGGGAAGAAAGGCACTTGCTATCGATGCCTTAGAGGGAACCGTCTCACTGAGAGGGAAGTTTGCATTGTTTGCAGTGCAAAGTATTGCCGCAGCTGTGTGATTAGAGCAATGGGGTCTATGCCTGAAGGTAGAAAGTGTGTTACTTGCATTGGTTATGGAATTGATGAGAGCAAGCGAGGAAAGCTTGGGAAGTTTTCTAGAATGCTCAAGAAGTTGTTGTCTGAGTTTGAAGTAAAGCAAATCAGGGAAGCTGAAAAGTTTTGTGAAGCAAATCAAATTCCAGCAGAGAATGTTCGTGTGAATGCAGAGCCTCTTGATTGGGATCAGCTCATGTTGCTTCTTAGCTGTCCAAACCCACCAAAAGGATTGAAACCAGGTTTCTATTGGTATGATAAAGCATCTGGCTTTTGGGGAAAGGAAGGCCAACGACCATGTCAAATTATCAGCCCTCACTTGGAGGTTGGGGGTCACTTGCTGAGAAATGCAAGCGGTGGAAAGACAAACGTAACTATAAATGGTCGAGAGATTACTAAAGAAGAGCTCTGGATACTGAAGTGGGCAGGAGTACAATGTGAAGGAACAACTGATTTTTGGTTGAGTCCTGATGGATCATACATGGAAGTGGGACAGAAGAATGTCAAAGGTCGTATATGGGATAAGCCTACAGTGAAGCTAGCTTCTGTAATTCTGTCACTGCCTGTTCCTCGTAGCTCTGTGACCTCTGGTGGTGAAGGACAAACTAAAGTTAGCCCACATAATCTTCAACAGAAAATGCTTTACAAATTTCTACTTGTTGGTTCTGTCAAGTCAGGAACATGTACTATATTCAAACAGGCCAAGCTTCTGTACAATGTTCCTTTCTCTGAAAATGAGCGCCAAAGTATCAAGTTGGTGATCCAAAGCAACTTGTATAGGTACATTGGTATCCTGCTGGAGGCGCGAGAATTTTTTGAGGAGAGTTTGTGCGAAAACTGGAACAAACGGCTTGTTGATGAATCAACTTCATCCGGGAATACTGGCGAGGTTATTGACACAACAATCTATTCCATTGGTCCAAAACTGAAATCTTTCTCAGATTGGCTACTCCAATACACAGTGTCAGGTAATTTGGATGCAATATTTCCAGCTGCTGCACGTGAGTATGCACCACTGGTGGAGGAGTTGTGGAGGGATCCAGCCATTCAGGCCACATACAACAGGATAGATGAAATCAAAATGCTACCTAGAAGTGCAAGTTACTTTCTAGAGCGGGCTCTTGAGATTTCAAAGATAGACTATAAACCCTTGGACATGGATATCTTATACGCTGAGGGTATAACCTTATCTAACAGCCTTACTTCAATGGAATTTTCATTTCCTGTGTCTGGTCATGATGTGGACTCTTTGGACCCTGAGTATCAACATGATCCTTCACTCAGGTACCAACTTATCAGAGTAAATCAAAGAAGCCTTGGAGAAAACGGCAAGTGGTTGAACATGTTTGAAGACACTGATGTAGTCTTATTCACTGTTTCCTTATCTGACTATGATGAGTACATAGTAGACAGTAATGGAGTTTCTACCAACAAGATGTTAGCAGCCAAGAATCTGTTTGAAAATATCATTGCCCATGAAGCCTTCAAGAACAAGAAATTCCTTTTAGTACTAACAAAATTCGATCTGCTAGAGGGAAAGATTGAAAGGGTGCCTCTAACAAGATGTGAATGGTTCTGTGACTTCCATCCAGTTATCAGCCAAAATAACACAAGAGGAAGTATTAGTAAATATAGCAATCAGACTCCATTGGCTCTGCGTGCTTTTCAATATATTGCTGTCAAGTTTAAGAGATTGTTCCATTCCCTTACCGATCGAAAGCTGTTTGTTTCATTGGTTTCTGGATTAGAACCTGATCCTGTTGATGAAGCTATGAGATATGCCAGAGAGGTAGTGGAGTGGGAAAAATGGGATCCCTCTTCTAAAAATGGGAGGTCTGAGATGATAACTACAACAACCTTTGAGGAGGCTACCACCTTATGA	2592	0.4228	MASLLKKLRPGVVPAIHDDSGDFSYEYSFAEEYKGPPIRYSIPEAPPFNLDKIPLAPLAPSPPLDHSSLPIIQPFRKTNASSTNPKLPIVPLPDLEVEQETGFHVFIPSNSDTTQSGSTSSFSPVSCEIVPCMEDDCENIPATPRHVRRPSAVTFREPQSNDMVDDEEFVDSQGGGFMASAKNNVRPRAVREGKKGTCYRCLRGNRLTEREVCIVCSAKYCRSCVIRAMGSMPEGRKCVTCIGYGIDESKRGKLGKFSRMLKKLLSEFEVKQIREAEKFCEANQIPAENVRVNAEPLDWDQLMLLLSCPNPPKGLKPGFYWYDKASGFWGKEGQRPCQIISPHLEVGGHLLRNASGGKTNVTINGREITKEELWILKWAGVQCEGTTDFWLSPDGSYMEVGQKNVKGRIWDKPTVKLASVILSLPVPRSSVTSGGEGQTKVSPHNLQQKMLYKFLLVGSVKSGTCTIFKQAKLLYNVPFSENERQSIKLVIQSNLYRYIGILLEAREFFEESLCENWNKRLVDESTSSGNTGEVIDTTIYSIGPKLKSFSDWLLQYTVSGNLDAIFPAAAREYAPLVEELWRDPAIQATYNRIDEIKMLPRSASYFLERALEISKIDYKPLDMDILYAEGITLSNSLTSMEFSFPVSGHDVDSLDPEYQHDPSLRYQLIRVNQRSLGENGKWLNMFEDTDVVLFTVSLSDYDEYIVDSNGVSTNKMLAAKNLFENIIAHEAFKNKKFLLVLTKFDLLEGKIERVPLTRCEWFCDFHPVISQNNTRGSISKYSNQTPLALRAFQYIAVKFKRLFHSLTDRKLFVSLVSGLEPDPVDEAMRYAREVVEWEKWDPSSKNGRSEMITTTTFEEATTL*	864

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g0562	863	Gene3D	-	656	836	IPR027417	-
	Lja3g0562	863	Pfam	G-protein alpha subunit	443	834	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Lja3g0562	863	Gene3D	-	480	629	IPR011025	GO:0007165
	Lja3g0562	863	SUPERFAMILY	Transducin (alpha subunit), insertion domain	479	628	IPR011025	GO:0007165
	Lja3g0562	863	PANTHER	EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2	14	849	-	-
	Lja3g0562	863	ProSiteProfiles	G-alpha domain profile.	450	846	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Lja3g0562	863	PANTHER	GTP-BINDING PROTEIN ALPHA SUBUNIT	14	849	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Lja3g0562	863	SMART	galpha_1	416	819	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Lja3g0562	863	PRINTS	Alpha G protein (transducin) signature	689	717	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Lja3g0562	863	PRINTS	Alpha G protein (transducin) signature	737	746	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Lja3g0562	863	PRINTS	Alpha G protein (transducin) signature	618	640	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Lja3g0562	863	PRINTS	Alpha G protein (transducin) signature	453	468	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Lja3g0562	863	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	449	838	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g0562	Lja-Chr3	5554735	5559787	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g0562	-		-	gmx:100791124	1205.28

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja3g0562	3	5554735	5559787	Lja3g0562	3	5554735	5559787	ECH