Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0560 ATGACAAAACGAGGAGCAACCATGTTAGTAGAGCCAATTCCAAACACCAACAACAACACTATTACCAAACACAGGGCCAAACTTGGAACCTTCTTCAACCAGCATGACCATGATCACCAAGACCTCACCACCATGAACCGCCTCAGCAGCAACACCTCCATCGCCAGCCCCCGATGCTACTACGGCGATGGCAGCACCACTCCGACCACCACCAGCGCCAGCGCCTCCCCTTTCACCATGTCGTCCCCGTGGGACCAATCTTCCTCCTCTCCCTACAACAAATCTCCATGGCAAGTACCCTCCACCGCAATCCACCTCCACCACCACCACCACCACTACCACCATAACAACAACAACGATGATGACGATGACGTCCCGGAAAACGGCCTCATCGGCTCCTTAGTCCGCGAAGAAGGCCATGTCTACTCCTTAGCAGTCTCCGGGGACTTGCTCTACACCGGTTCCGATAGCAAGAACATAAGGGTGTGGAAGGATCTCAAGGACTACACTGGATTCAAATCCAGCAGTGGTTTGGTCAAAACCATAGTAATCTCCGGCGAGAAAATCTTCACCGGCCACCAGGACGGGAAGATCAGGGTGTGGAAGATTTCTTCCAAAAGCTCCGGCACCCACAAGCGCATTGGAAGCTTGCCCACTTTCAAGGAGTATGTTAAAAGCTCCATGAATCCTAAGAACTACGTGGAGGTTCGCCGGAACCGGAGCGCCGTCAAGGTGAAGCACATCGACGCCATTTCCAGCTTGAGCCTCGACGAGGAAGAAGGGTTGCTTTACTCTGCCTCGTGGGATAAGACGATCAAGGTGTGGCGCGTGGCGGATTCCAAGTGCATGGACTCCATCAACGCGCACGACGATGCCGTTAACGCGGTTGCGGCGGCGGCGTTTGGAGGGTTTGTTTTCACCGGCTCTGCTGACGGAACGGTGAAGGTGTGGAGGAGGGAGAAATCAGGGAAGAAGACGAAGCATGTGCTGGATAGAGTTCTGCTGAAGCAGGAGAACGCCGTGACGGCGCTCGCGGTGAACTGTATGTCCACGGTGGTTTACGGTGGCTCCTCCGATGGGCTGGTGAATTTCTGGGAGCGGAGTCAGAAGAGCAGCCTCACACACGGTGGCGTTCTCAAGGGGCACAAGCTCGCCGTGCTGTGCCTCACGGCGGCGGGGAACCTTGTCTTCAGCGGCTCCGCTGATAAGAATGTCTGTGTGTGGAAGAGGGATGAGAACGGGGTCCACACGTGCCTTTCTGTTCTGACAGGGCACACCGGCCCTGTGAAGTGCCTCGCCGTCGAGGAAGAAGAGGAGGAGGGGGAGAGGGAGGGCCAGAAGGGTGATGAAAGGTGGATAGTTTACACAGGGAGCTTGGACAAGTCTGTGAAGGTGTGGCGCGTGGCGGAACAGGCGCCGGAGTTGAGCATGAGCCAAGGGTGGCCTACTCCGAGCCGCGGCGGTGCACCGTATGATTCCCCTGCTGCAGGATTGAATTTGAGTTATTCTTCGCCGTCCCCTGCTGCAGGATGGAGTTATTCTTCGCCGGCGATAATGAGTGGTGGCAACGGCTATGTTGATCGGAATGGTAATAGGAATGGGAGCAACAATTGCTCAAGTCCACAAGGGAATGATAATGAGAAGGGAAATCTGAAGAGCAACAGCAACAAACAAAGTGTTTTACCTGCTGTAATTGAAGGGAGTGGAAATGGGAATGCCAACAATCAACAAGATGAGAAGGGCAATCAGAAGAGCAACAACAACAATCAAACTCCTTTACCTGTAAGTGGAGGGAATGGAAGCAACAATTCAGGTCAACAAGGGAAGGGTGATGAAAATGGCAATCAGAAGAACAACAGCAGCAATCAAAGTGTTTTACCTGCTGTAAGTGGAGGGAATGGCAATGGAAATGGCAACAAAAACAGCTCAAGTCAACAAGGGAAGGATAATGAGAAGGGTAATCAGAAGAACAACATCGATACACAAAGCCTTTTACCTGCTGTAAGTGGAGGCAATGACAATCAGAATGACAACCGCAGCCATCAACAAGATGAGAAGGGCAATTTGAATAACAACAAGAATCAAAGTCTTTTGGCTAAAGATGGTGGAAGTGGAAATCAGAAAAGCAGGAGCAATAATCAACAAGTGAAGGGCAATGAGAATAACAGCAGCAATCAAAATGTTTCATCTGCGAGTGGAGGGAATAACAACAACAACAGCTCCAGGCAACAAGGGAATGATGATGAGAAGAGCAATCAGAAGAGCAACAGAAGCAACCCAAGTCTTTTACCTCCTGTAAGTGGAGGGAATGACAATCGGAACAACAACAACAGTCAACTAGGGAATGGCAATGAGAAGGGCAATTGGAATAACAGCAACAAGGATCAAAGTCCTTTCTCTAAAAGTGGAGGAAATGGCAATGAGGATGGCAATAAGAGCGGGAGCAGCAAAAATCAACAAGGGAATGACAATCTGAATACCACCAACAAGAATCAAAGCCCTTTCTCTAAAAGTGGAGGAGATGGTAATGGAAGTGGCAGTGACAATCAGAAAGGTAGCAACAACAATCAACAAGGGAAAGGTAGTGAGAGTGGCGATTGCAATAACAACAAGAGTGAAGGCCTTTTGTCAAAAAGTGGAGGAAATTCCAATCAGAGAGGCAGCAACAGCAATCAGCAAGGGGCTGACAATGGCTATTTCAGCCAGAGAGGCAGCAACAACAATCAACAAGGGAATGAAAATAACAATGGCAATCGGAATGACAACAAGAATCAAGTTCCTTTGTCTAAAACTGGAGGAAGTGGCAGTGGCAATCAGATAGGTAGCACCAGCAATCAACAAGCAAATCTCAATGAGAACAGAGGTGGAGGAAGTGGCAATGGGATTGACAACAACAACAATAATCAGCAAGGGAATGGCAATCAGAATAGCAGCAACAACAATCGAAGTCTTTTGCCTCAAAGTGGAGAAAATGGCAATGGGAGTGGCAATAGGAATAACAGCAGCAACAATCAAAGTCTTCCATCTAAAAGCGGAGGAAATGTCAGTGGGAAAGATAATCAAGTTGGCACCAACAGCAAGCAACAAGCGAATGCCAATCCAAATAGCAGCAGCAACAATCAAAGTCTTCCCTCTAAAAGCGGAGGAAATGTCAATGGGAAAGACAATCAAGCTGCTAACAAGAGCAATCAACAAGCGAATGTCAATCCATATAGCAGCAGTAACAATCAAAGCCTTCCCTCTAAAAGTGAAGGAAATGGCAATGGGAAAGACAATCAAGCTGGCAACAACAGCAACCAACAAGGGAGTGGCAATAAGAATACCAGCAGCAGCAGCAGCAGCAATCTAAGTGTTCGGTCTGTAAGAGGAGGAACTGGCAATCAAACTGCCAGCCAAAACAGCAACAGTCAACAAGGGAACCATAATCGGAATACCAGCAGCAATAATCAAAGTGTTCAGTCTAAAAGTGGAGGAAATGTCAATCAAACTGGCAGCAGCAACAGCAACAATCAACAAGGGAATGCCAATCAGAATTCCAGCAGCAAGAATCAAAGCCTTTTGCCTAAAAGCAGTGGAAACAATAATGGGAATGGCAGCAACAATCAACAAGGCAATGATAAGAGGAATGACAGCAAAAGCAATCCAACTCTGTCATCAACAAGTGGAGGAGATAGCAATTTGAATGTTAATCGTGGTAGCGCCAACAAGAAGCAAGGCATTTTGTCAGCTAATGAAGGAAGTGGCAGTGGCAACATGAACAACAATAGGAGCAGTAATAATAATAATAATTCTACTAATAGCAATAGCAATAGTACTAGCAGTAATATTAGTGATTCCCAAAATAGGAACAACAGGGGACTAATAGTGGCCTTACTCGTTGAAATGGATAATGATGGACAAGCCTTCGCTTTTGATTGGGCCACAAAAGCATGA 3933 0.4783 MTKRGATMLVEPIPNTNNNTITKHRAKLGTFFNQHDHDHQDLTTMNRLSSNTSIASPRCYYGDGSTTPTTTSASASPFTMSSPWDQSSSSPYNKSPWQVPSTAIHLHHHHHHYHHNNNNDDDDDVPENGLIGSLVREEGHVYSLAVSGDLLYTGSDSKNIRVWKDLKDYTGFKSSSGLVKTIVISGEKIFTGHQDGKIRVWKISSKSSGTHKRIGSLPTFKEYVKSSMNPKNYVEVRRNRSAVKVKHIDAISSLSLDEEEGLLYSASWDKTIKVWRVADSKCMDSINAHDDAVNAVAAAAFGGFVFTGSADGTVKVWRREKSGKKTKHVLDRVLLKQENAVTALAVNCMSTVVYGGSSDGLVNFWERSQKSSLTHGGVLKGHKLAVLCLTAAGNLVFSGSADKNVCVWKRDENGVHTCLSVLTGHTGPVKCLAVEEEEEEGEREGQKGDERWIVYTGSLDKSVKVWRVAEQAPELSMSQGWPTPSRGGAPYDSPAAGLNLSYSSPSPAAGWSYSSPAIMSGGNGYVDRNGNRNGSNNCSSPQGNDNEKGNLKSNSNKQSVLPAVIEGSGNGNANNQQDEKGNQKSNNNNQTPLPVSGGNGSNNSGQQGKGDENGNQKNNSSNQSVLPAVSGGNGNGNGNKNSSSQQGKDNEKGNQKNNIDTQSLLPAVSGGNDNQNDNRSHQQDEKGNLNNNKNQSLLAKDGGSGNQKSRSNNQQVKGNENNSSNQNVSSASGGNNNNNSSRQQGNDDEKSNQKSNRSNPSLLPPVSGGNDNRNNNNSQLGNGNEKGNWNNSNKDQSPFSKSGGNGNEDGNKSGSSKNQQGNDNLNTTNKNQSPFSKSGGDGNGSGSDNQKGSNNNQQGKGSESGDCNNNKSEGLLSKSGGNSNQRGSNSNQQGADNGYFSQRGSNNNQQGNENNNGNRNDNKNQVPLSKTGGSGSGNQIGSTSNQQANLNENRGGGSGNGIDNNNNNQQGNGNQNSSNNNRSLLPQSGENGNGSGNRNNSSNNQSLPSKSGGNVSGKDNQVGTNSKQQANANPNSSSNNQSLPSKSGGNVNGKDNQAANKSNQQANVNPYSSSNNQSLPSKSEGNGNGKDNQAGNNSNQQGSGNKNTSSSSSSNLSVRSVRGGTGNQTASQNSNSQQGNHNRNTSSNNQSVQSKSGGNVNQTGSSNSNNQQGNANQNSSSKNQSLLPKSSGNNNGNGSNNQQGNDKRNDSKSNPTLSSTSGGDSNLNVNRGSANKKQGILSANEGSGSGNMNNNRSSNNNNNSTNSNSNSTSSNISDSQNRNNRGLIVALLVEMDNDGQAFAFDWATKA* 1311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0560 1310 Gene3D - 238 336 IPR015943 GO:0005515
Lja3g0560 1310 MobiDBLite consensus disorder prediction 1 20 - -
Lja3g0560 1310 Pfam WD domain, G-beta repeat 138 164 IPR001680 GO:0005515
Lja3g0560 1310 Pfam WD domain, G-beta repeat 281 317 IPR001680 GO:0005515
Lja3g0560 1310 Pfam WD domain, G-beta repeat 377 409 IPR001680 GO:0005515
Lja3g0560 1310 Pfam WD domain, G-beta repeat 247 275 IPR001680 GO:0005515
Lja3g0560 1310 Pfam WD domain, G-beta repeat 417 466 IPR001680 GO:0005515
Lja3g0560 1310 ProSiteProfiles Trp-Asp (WD) repeats profile. 379 409 IPR001680 GO:0005515
Lja3g0560 1310 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 17 481 IPR045182 -
Lja3g0560 1310 SUPERFAMILY WD40 repeat-like 131 478 IPR036322 GO:0005515
Lja3g0560 1310 Gene3D - 337 483 IPR015943 GO:0005515
Lja3g0560 1310 Gene3D - 124 237 IPR015943 GO:0005515
Lja3g0560 1310 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 17 481 - -
Lja3g0560 1310 MobiDBLite consensus disorder prediction 107 126 - -
Lja3g0560 1310 MobiDBLite consensus disorder prediction 687 746 - -
Lja3g0560 1310 MobiDBLite consensus disorder prediction 755 1281 - -
Lja3g0560 1310 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
Lja3g0560 1310 SMART WD40_4 279 318 IPR001680 GO:0005515
Lja3g0560 1310 SMART WD40_4 165 202 IPR001680 GO:0005515
Lja3g0560 1310 SMART WD40_4 372 409 IPR001680 GO:0005515
Lja3g0560 1310 SMART WD40_4 127 164 IPR001680 GO:0005515
Lja3g0560 1310 SMART WD40_4 237 276 IPR001680 GO:0005515
Lja3g0560 1310 SMART WD40_4 415 467 IPR001680 GO:0005515
Lja3g0560 1310 SMART WD40_4 327 366 IPR001680 GO:0005515
Lja3g0560 1310 MobiDBLite consensus disorder prediction 524 1281 - -
Lja3g0560 1310 ProSiteProfiles Trp-Asp (WD) repeats profile. 286 317 IPR001680 GO:0005515
Lja3g0560 1310 MobiDBLite consensus disorder prediction 65 96 - -
Lja3g0560 1310 CDD WD40 138 467 - -
Lja3g0560 1310 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 277 - -
Lja3g0560 1310 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 286 317 - -
Lja3g0560 1310 MobiDBLite consensus disorder prediction 526 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0560 Lja-Chr3 5543319 5547573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0560 245 466 Miscellaneous Gene Families AT5G08390 24.242 1.79e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0560 - - lja:Lj3g3v3337440.1 1941.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0560 3 5543319 5547573 Lja3g0560 3 5543319 5547573 ECH