Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0555 ATGTGGAAGGGTATGAATTTTCGAGAAGCAGAAGCAGCTGACTTGATCAACTCTGATTTCAGGGACCTGAGTCTTGCTGCTACCAAACTAGCCAATCATGCCGTCAACCTTGGAGTTGGCTTCGGCTTTGGAGCCTCCTTTTTCGGATTGATTGCTGCCATTGCTGCTATTTATTTGTTGGTTTTGGATCGTACAAACTGGAAGACAAACATTCTTACAGGACTACTCATTCCATACATTTTCTTCAGCTTGCCTTCAATCATTTTCAATGTCTTCAGGGGAGAAATTGGAAAATGGATTGCTCTAGTTGCTATTGTATTGCGCATTTTCATTCCTAAACACTTCCCAGATTGGCTGGAATTACCTGCTGCTTTGATTATTCTGATCGTTGTAGCTCCTGGTCTAATTGCAAACACCTTTAGAGACAACATTGTTGGGGTGGTAGTGTGCCTTGTCATTGCATGTTATTTGCTGCAAGAACACATTCGAGCATCTGGTGGTTTCAGAAACTCCTTCACTAAAGCGAATGGCGTATCAAATTCTATTGGCATAATAATTCTGTTAGTCTATCCCATCTGGGCGGCTGTTGTCATAATTTTTTAG 603 0.4163 MWKGMNFREAEAADLINSDFRDLSLAATKLANHAVNLGVGFGFGASFFGLIAAIAAIYLLVLDRTNWKTNILTGLLIPYIFFSLPSIIFNVFRGEIGKWIALVAIVLRIFIPKHFPDWLELPAALIILIVVAPGLIANTFRDNIVGVVVCLVIACYLLQEHIRASGGFRNSFTKANGVSNSIGIIILLVYPIWAAVVIIF* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0555 200 Pfam Cold acclimation protein WCOR413 8 187 IPR008892 GO:0016021
Lja3g0555 200 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 1-RELATED 8 199 - -
Lja3g0555 200 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2 8 199 IPR008892 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0555 Lja-Chr3 5480309 5482431 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0555 - - gmx:100811430 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0555 3 5480309 5482431 Lja3g0555 3 5480309 5482431 ECH