Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0554 ATGGCGGAGATGTACACTGTGAAAGTGGAGGAGGCAAGGCCAGCAACTCATGAAAATCCATCAGCAGGTCCTGTTTACAGATGCATTTATGCAAAAGATGGTCTCTTGGAGCTACCAGAAAATTTACAATCTCCATGGGACTTTTTCAGAGACTCTGCGACAAGGTGCCCCAGCAACCCAATGCTGGGTCGGCGTCAAAAAACCGATTCAAAGGTGGGTGCATATGAATGGGTCACGTATAAGGAGGCTTATGATGCTGCAATCCGAATGGGTTCCGCCATGAATAGCTGTGGTGTCAATCCTGGAGACCGTTGTGGCATATATGGATCCAACTGTCCTGAATGGATTATTGCAATGGAGGCTTGTAATAGCTATGGAGTAACATATGTCCCATTATATGACACCCTCGGTCCTAATGCTGTGGAGTTTATCATAAACCATGCTGAAGTTTCAATAGCATTTGTACAGGATAGCAAAATTCCTTCTATTTTGTCATGTCTTGGTCGATGTTCGAATCTTAAAACTATTGTGAGCTTTGGCAATGTTTCAACCACCCAAAAGAAGGAAGCTGAGGAACTTGGTGCATCCTGCTTCTCATGGGGAGAGTTTCTTCAGTTGGGAAATATGGATTCAGATCTACCATCAAAAAAGAGGACTGACATCTGCACAATCATGTACACTAGTGGAACAACAGGTGAACCCAAAGGTGTTGTTATTAAGAATGAGGCTTTCATGGCGGAAGTGTTGTCTGTTGATCAAATACTTTTCTTAACTGATAAAGTGGCAACAGAAGACGATGTGTACTTTTCTTTTCTTCCTCTTGCTCATGTATATGACCAGATAATGGAGACCTATTGCATCTACAAGGGCTCCTCAATTGGATTTTGGCAAGGCGATATCAGATTTTTAATGGAAGATATTCAGACGTTGCAACCAACTTTGTTTTGTGGTGTTCCTAGAGTTTATGATCGTGTTTATGCTGGCATCAACAGCAAAATTTCATCTGGAGGAGCACTGCGAAATGCATTGTTTCAATATGCATATAACTTCAAGTTGGGATATCTAAAGAAGGGCCTTCCACAAGATAAAGCATCACCTCGGTTTGATAGGCTTGTGTTTGATAAGATAAAACAAGCGTTAGGTGGACGAGTTCGTATCCTGTTATCAGGAGCTGCTCCTTTGCCTCCACACGTGGAGGAGTTTTTGAGGGTCACATTTGGATCTACTTTGGCACAAGGATATGGTCTTACAGAAAGTTGTGGAGGGTGTTTCACTGCAATAAGCAATGTGTTTTCTATGATGGGAACGGTTGGAGTCCCCATGACGACCATTGAGGCCCGGCTTGAATCCGTGCCAGAGATGGGATATGATGCACTTTCCAGTCAGGCCCGTGGAGAAATTTGCCTCAGAGGGAACACCTTGTTCTCTGGTTACCACAAGCGTCAAGATCTTACTGAACAAGTCCTGGTTGATGGTTGGTTTCATACAGGTGACATTGGAGAATGGCAGCCTGATGGAGCCATGAAAATTATTGATAGGAAAAAGAATATCTTCAAATTGTCTCAAGGGGAATATGTTGCTGTGGAGAATATTGAAAACAAGTACCTGCAATGCCCTCTTATAGCATCGATTTGGGTCTATGGAAACAGTTTTGAGTCTTTCTTGGTGGCAGTGGTGGTCCCTGAAAGAATGGCTCTTGAGGATTGGGCAGTGAAGCATGATGTAACTGATGATTTTAAATCTTTATGTGAAAATCCAAAGGCAAGAAAGTACATTTTGGATGAGCTCAATAGCACTGGTCAGAAACACCAACTTAGAGGTTTTGAGCTGCTAAAAGCAGTTCATCTGGAACCAATTCCCTTTGACATGGAGAGAGATCTAGTAACTCCAACATTCAAATTGAAGAGACCACAGTTGCACAAGCACTATAAGGATTATATTGATAAACTATACAAAGAAGTGAAGGGAAAGGTGGTGTGA 1980 0.4247 MAEMYTVKVEEARPATHENPSAGPVYRCIYAKDGLLELPENLQSPWDFFRDSATRCPSNPMLGRRQKTDSKVGAYEWVTYKEAYDAAIRMGSAMNSCGVNPGDRCGIYGSNCPEWIIAMEACNSYGVTYVPLYDTLGPNAVEFIINHAEVSIAFVQDSKIPSILSCLGRCSNLKTIVSFGNVSTTQKKEAEELGASCFSWGEFLQLGNMDSDLPSKKRTDICTIMYTSGTTGEPKGVVIKNEAFMAEVLSVDQILFLTDKVATEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGDIRFLMEDIQTLQPTLFCGVPRVYDRVYAGINSKISSGGALRNALFQYAYNFKLGYLKKGLPQDKASPRFDRLVFDKIKQALGGRVRILLSGAAPLPPHVEEFLRVTFGSTLAQGYGLTESCGGCFTAISNVFSMMGTVGVPMTTIEARLESVPEMGYDALSSQARGEICLRGNTLFSGYHKRQDLTEQVLVDGWFHTGDIGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENIENKYLQCPLIASIWVYGNSFESFLVAVVVPERMALEDWAVKHDVTDDFKSLCENPKARKYILDELNSTGQKHQLRGFELLKAVHLEPIPFDMERDLVTPTFKLKRPQLHKHYKDYIDKLYKEVKGKVV* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0554 659 Pfam AMP-binding enzyme C-terminal domain 531 600 IPR025110 -
Lja3g0554 659 Gene3D - 35 513 IPR042099 -
Lja3g0554 659 SUPERFAMILY Acetyl-CoA synthetase-like 39 652 - -
Lja3g0554 659 Pfam AMP-binding enzyme 72 521 IPR000873 -
Lja3g0554 659 ProSitePatterns Putative AMP-binding domain signature. 224 235 IPR020845 -
Lja3g0554 659 PANTHER LONG-CHAIN FATTY ACYL COA LIGASE 2 655 - -
Lja3g0554 659 CDD LC-FACS_euk 73 652 IPR045311 GO:0004467|GO:0006631
Lja3g0554 659 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 2 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0554 Lja-Chr3 5474405 5480252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0554 5 653 Acyl Lipid Metabolism Gene Families AT1G64400 55.828 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0554 K01897 - gmx:100790068 1208.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0554 3 5474405 5480252 Lja3g0554 3 5474405 5480252 ECH