Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0551 ATGGATGAATTTCCTGGCTCAGTAGGCACCAGCGCCAGCTTGAGCCTGAGATTAGGCCAGACCATATGCTCATCTGCCTCACTTCTTTTCATGTCTTTGGGAGTTGAATTCTACAGCTACACATCCTTCTGCTTTCTGGTAACAATTATGGGTTTGGTAATACCTTGGAGTTTCACGTTAGCAGTGGTTGATGGGTACTCAACTCTGGTAAAATGCCCCGTTCGTCAACCAGGAATACTGTTGATTATCATTGTGGGAGACTGGGTGTTATCAACCCTAACATTAGCAGCAGCTTCCTCAACAGCAAGTGTGGTAGATCTCCTGCTGAACTCCGACGGGTCTTTTTGTCCTATAAAGTTTTGCTGCAGGTACAGGATATCTGCAGTTATGGCCTTCCTGACATGGTCTCTATCTTTGGCATCCTCTCTTTTTAACCTTTGGCTATTACCCTCTTTGTGA 459 0.4532 MDEFPGSVGTSASLSLRLGQTICSSASLLFMSLGVEFYSYTSFCFLVTIMGLVIPWSFTLAVVDGYSTLVKCPVRQPGILLIIIVGDWVLSTLTLAAASSTASVVDLLLNSDGSFCPIKFCCRYRISAVMAFLTWSLSLASSLFNLWLLPSL* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0551 152 Pfam Casparian strip membrane protein domain 8 136 IPR006702 -
Lja3g0551 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 IPR045009 -
Lja3g0551 152 PANTHER CASP-LIKE PROTEIN 5C3 1 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0551 Lja-Chr3 5460100 5462778 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0551 - - gmx:100810360 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0551 3 5460100 5462778 Lja3g0551 3 5460100 5462778 ECH