Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0550 ATGGTGATTCAAGCTCAACTAGTTAAACAATTACCCCAAATTCTCAATCCCAAACCCTTATCCCTCTTCTTCTTCTCCTCTTCATGCTCCCAAAATCACCAAAGCGTGGTGGTAACAACCGCAGTTTCCATCCTCACCAATCAACGTTCCAAGTCCCGTTGGGGCTATCTCCGATCAGCGTGCTCCGACGGCATCAACCCCGATGAGTTTTCCGAAATCGCCCTCCACCTCAAGAACAAACCCCACCTCGCTCTGAGCTTCTTCCAATGGACCAAATCGGAATCCCTCTGCCGCCACAACCTCGCCTCTTACTCCACCATCATCCACCTCCTCGCACGTGGCCGCCTGAAATCACACGCCTCCGACGCCATCCGCACCGCCCTCCGCGCTCCCGACGACGACGAACACCGTTGTTCCGATTCCCCTCCTTTGAAACTCTTTGAGACGCTTGTCAAAACCTACCGAGAGTGTGACTCTGCTCCGTTCGTGTTCGATTTGTTGATCGAAGCATGTTTGGAATCGAAGAAGAGTGTTTCGCCTTCGATTGAAATTGTGAGAATGTTACTCTCACGCGGGATTAGCCCCAAAGTTAGCACGTTGAATTCTCTGATTTCTAGGGTTTGTAAAAGTCGAGGGGTGGATGCAGGGTACGCGATTTACCGGGAGTTTTTCCGGTTAGACGAGGAAAAAATGGAGATTTTGAAAAGGGGTTCTGGTTTTAGAGTGATCCCTAATGTGCATACTTATAATGCATTGATGCTGTGCTGTTATCAGGATGGTTTAGTGGAGAAGGTAGAGGAAATTTGGCATGAAATGGGTGAAATGGAGTGTGATCGCAATGCTTATAGCTATAGTGTGTTGATGGCTGCTCTTTGTGAACATGGGAGGATGGAGGATGCTGAGAAGTTGTGGGAAGAAATGAGAGAGGAGAAAATTGAGCCGGATGTAGTTAGTTATAATACCATGATTGGTGGGTTTTGTAAGGTTGGAGAGGTTGGAAGAGGTGAAGAATTTTTCAGAGAAATGGGATTGTCTGGTATTGAAGGTACAGCTTCAACTTATGAGCATCTTGTCAGGGGGTATTGTAATGTTAGGGATGTTGATTCGGCTGTTCTTGTTTATAAGGATATGTCTAGGAGGGATTTCAGGCCTGATGCTTCAACGCTTGACATGTTGATTGTGTTACTTTGTGATAAGGGAAAGGTTCAGGAAGCTCTGGAGTTTTTAAAGCATGGTGTTGGTAAATTTGATTTACATCCCTTGGAAAAGAGTTATGAGGCCTTGATAAAGGGGTTATGTTTTGAGGGGAGGATGGAAGAAGCATTGAAGCTTCAGGCAGATATGGTGGGAAAAGGGTTTCGACCTCATTCTGAAATATATGGCGCTTTTATTGATGGGTATATTAGACAAGGGAACGAAGAAATGGCTGGAGCTTTGAGGAAAGAAATGCTGCAATCTCAGATACAGAGCTAA 1473 0.4582 MVIQAQLVKQLPQILNPKPLSLFFFSSSCSQNHQSVVVTTAVSILTNQRSKSRWGYLRSACSDGINPDEFSEIALHLKNKPHLALSFFQWTKSESLCRHNLASYSTIIHLLARGRLKSHASDAIRTALRAPDDDEHRCSDSPPLKLFETLVKTYRECDSAPFVFDLLIEACLESKKSVSPSIEIVRMLLSRGISPKVSTLNSLISRVCKSRGVDAGYAIYREFFRLDEEKMEILKRGSGFRVIPNVHTYNALMLCCYQDGLVEKVEEIWHEMGEMECDRNAYSYSVLMAALCEHGRMEDAEKLWEEMREEKIEPDVVSYNTMIGGFCKVGEVGRGEEFFREMGLSGIEGTASTYEHLVRGYCNVRDVDSAVLVYKDMSRRDFRPDASTLDMLIVLLCDKGKVQEALEFLKHGVGKFDLHPLEKSYEALIKGLCFEGRMEEALKLQADMVGKGFRPHSEIYGAFIDGYIRQGNEEMAGALRKEMLQSQIQS* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0550 490 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 16 488 - -
Lja3g0550 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Lja3g0550 490 Gene3D Tetratricopeptide repeat domain 364 490 IPR011990 GO:0005515
Lja3g0550 490 Gene3D Tetratricopeptide repeat domain 232 363 IPR011990 GO:0005515
Lja3g0550 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Lja3g0550 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Lja3g0550 490 Gene3D Tetratricopeptide repeat domain 71 226 IPR011990 GO:0005515
Lja3g0550 490 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 16 488 - -
Lja3g0550 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Lja3g0550 490 Pfam PPR repeat family 352 397 IPR002885 -
Lja3g0550 490 Pfam PPR repeat family 287 328 IPR002885 -
Lja3g0550 490 TIGRFAM PPR: pentatricopeptide repeat domain 282 316 IPR002885 -
Lja3g0550 490 TIGRFAM PPR: pentatricopeptide repeat domain 424 455 IPR002885 -
Lja3g0550 490 TIGRFAM PPR: pentatricopeptide repeat domain 247 280 IPR002885 -
Lja3g0550 490 TIGRFAM PPR: pentatricopeptide repeat domain 317 348 IPR002885 -
Lja3g0550 490 TIGRFAM PPR: pentatricopeptide repeat domain 353 386 IPR002885 -
Lja3g0550 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Lja3g0550 490 Pfam PPR repeat 459 486 IPR002885 -
Lja3g0550 490 Pfam PPR repeat 248 276 IPR002885 -
Lja3g0550 490 Pfam PPR repeat 424 453 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0550 114 489 Miscellaneous Gene Families AT4G11690 22.546 8.66e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0550 - - gmx:100809831 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0550 3 5449535 5452359 Lja3g0550 3 5449535 5452359 ECH