Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0546 ATGTCCACCCTTGGGAGCACATGTTTCACTGAAGAGCAAGAAGCTCTTGTGGTCAAGTCATGGAGCGTGATGAAGAAGAATTCTGCTGAACTGGGTCTCAAGCTTTTCTTGAAAATATTTGAGATTGCTCCATCAGCTCAGAAATTGTTCTCTTTCTTGAGAGATTCAAAAGTTCCTTTGGAGGAGAACCCCAAGCTCAAGCCTCATGCCATGTCTGTCTTTGTCATGACTTGTGAATCAGCAGCTCAACTGCGGAAGGCTGGAAAAGTCACTGTGAGAGAATCAACCTTGAAAAAGCTAGGTGCTACCCATTATAAATATGGAGTAGTAAACGAGCATTTTGAGGTTACAAAGTTTGCACTACTGGATACCATAAAAGAAGCTGTACCTGAAATGTGGTCACCAGAGATGAAGAATGCATGGACACAAGCTTATGATCAGCTGGTCGGTGCCATTAAATCTGAAATGAAGCCATCATCTTCTTAG 486 0.4259 MSTLGSTCFTEEQEALVVKSWSVMKKNSAELGLKLFLKIFEIAPSAQKLFSFLRDSKVPLEENPKLKPHAMSVFVMTCESAAQLRKAGKVTVRESTLKKLGATHYKYGVVNEHFEVTKFALLDTIKEAVPEMWSPEMKNAWTQAYDQLVGAIKSEMKPSSS* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0546 161 CDD class1_nsHb-like 9 157 - -
Lja3g0546 161 Pfam Globin 34 152 IPR000971 GO:0020037
Lja3g0546 161 PANTHER LEGHEMOGLOBIN-RELATED 4 159 IPR001032 GO:0019825|GO:0020037
Lja3g0546 161 Gene3D Globins 7 155 IPR012292 GO:0019825|GO:0020037
Lja3g0546 161 ProSitePatterns Plant hemoglobins signature. 63 74 IPR019824 GO:0019825|GO:0020037
Lja3g0546 161 PANTHER HEMOGLOBIN 1, GLB1,NSHB1,ATGLB1,HB1 4 159 - -
Lja3g0546 161 ProSiteProfiles Globin family profile. 9 157 IPR000971 GO:0020037
Lja3g0546 161 PRINTS Plant globin signature 10 27 - -
Lja3g0546 161 PRINTS Plant globin signature 35 55 - -
Lja3g0546 161 PRINTS Plant globin signature 63 91 - -
Lja3g0546 161 PRINTS Plant globin signature 128 154 - -
Lja3g0546 161 SUPERFAMILY Globin-like 7 157 IPR009050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0546 Lja-Chr3 5431123 5432641 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0546 - - rcu:8279549 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0546 3 5431123 5432641 Lja3g0546 3 5431123 5432641 ECH