Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0543 ATGAAGTCTCTGATAGTGAGAGATGCTCTGGTGGTCTACCGTGACCATGTCCAAGCAATAAAATCTGGTTTGGCATCAAGCATTTTCACCTGTAATCAACTCATTCACCTTTATTCCATACACGGCCTTTTGCAAGAGGCCCACAAACTGTTCGATAAAATGCCCCACCGGAATGCATTCTCTTGGAATGCCATTATCATGGCATATATAAAGGCACACAACTTGACACAAGCACGAGCTCTATTTGACTCTGCCTCTCACAGAGATTTGGTTTCTTATAATTCCATGTTGTCAGCTTATGCTGGGGCTGACGGGTGCGACACCGTGGCACTTGATTTGTTTGCTAGAATGCAATCTGCAAGGGACACAATTGGGATGGATGAGATCACACTCACAACCATGCTTAACCTTTCGGCTAAACTACGTGTGGTGTGTTATGGGAAGCAGATGCATTCATATATGGTGAAAACTGCAAATGATTTAAGCAAGTTTGCATTGAGTTCTCTCATTGACATGTACTCTAAATGTGGCTCGTTTCGTGAAGCATACAATGTGTTTAGTGGCTGTGATGGGGTGGTGGACTTGGTTTCAAAGAATGCAATGGTTGCAGCTTGTTGTAGGGACGGAAAGATGGACATGGCTTTGAATGTATTTTGGAAAAATCCTGAATTTAATGATACTGTGTCTTGGAATACTTTGATTGCAGGATATGTCCAGAATGGCTATATGGAGAGAGCACTTACCTTATTTATTGAGATGATTGAAAAGGGTATTGAGTACAATCAACACACTTTAGCAAGTGTTTTGAGTGCCTGCACCGGTCTAAAATGTTTGAAACTTGGCAAGTGTGTCCATGCCTTGGTATTGAAAAATGATGGCTGTTCAAATCAATTTGTTAGCAGTGGCATTGTTGACTTCTACTGTAAGTGTGGGAATATGAGGTATGCAGAGTCCGTGTATGCAGGAATTGGGATTAAAAGTCCATTTGCAACTTCTTCTTTGATTGCAGGCTATTCATCTAAAGGCAACATGACAAAAGCAAAAAGGCTTTTTGATTCACTGTCGGAAAGAAACTATGTTGTCTGGACCGCTCTATGTTCTGGCTATGTCAAATCACAACAATGTGAGGCAGTCTTCAAACTATTCCGAGAGTTCAGAACTACAGAGGCACTAATTCCTGATACAATGATCATCGTCAATGTTCTTGGTGCCTGTGCAATACAAGCTACCCTTAGTTTGGGAAAGCAGACCCATGCTTACATCTTGAGGACTAAGCTTAATATGGATGAAAAATTGGCGAGTGCTTTGGTTGATATGTACTCAAAATGCGGTAATATCGCATACGCTGAGAAAAGCTTCCAACTAGTGACTGATAGTGATAGGGATGTCATCTTATATAATGTCATGATAGCTGGTTATGCTCATCATGGTTTTGAAAATAAAGCTATTCAGCTTTTCCAGGAAATGTTGAAGATAAGTCTCAAACCAGATGCAATCACTTTCGTAGCACTTCTATCAGCTTGTCGACATCGTGGATTAGTTGAACTAGGAGAGAAATTCTTTATGTCCATGAAAGAAGATTACAATGTATTGCCCGAGATTTACCACTACGCATGCATGGTTGATATGTATGGTAGGGGTAATCAACTAGAAAAAGCTGTAGAATTTATGAGGAAGATTCCTATACAGATAGATGCTACAATCTGGGGAGCATTTCTTAATGCTTGTAAGATAAACAACAATACAACACTTGTCAAACAGGCAGAAGAGGAACTGTTAAAAGTTGAAGCAGATAATGGGTCTCGGTATGTGCAGTTGGCCAATGTCTATGCCGCTGAGGGGAAATGGAATGAGATGGGAAGAATAAGAAAAGAAATGAGAGGTAAGGAGGCTACAAAGCTTCCTGGTTGCAGTTGGATATATGTAGAAAATGGTATTCATGTATTTACTTCTGGTGATACATCTCATTCAAAAGCAGATGCAATATATTCAACATTGGTATGCTTGTATGGGAAACTGTATTTAACTTTCACAGAACTGAAGCAACTTGATGAAATTCAGGGTAATATTGTTGCGGACATATTTTGA 2088 0.3999 MKSLIVRDALVVYRDHVQAIKSGLASSIFTCNQLIHLYSIHGLLQEAHKLFDKMPHRNAFSWNAIIMAYIKAHNLTQARALFDSASHRDLVSYNSMLSAYAGADGCDTVALDLFARMQSARDTIGMDEITLTTMLNLSAKLRVVCYGKQMHSYMVKTANDLSKFALSSLIDMYSKCGSFREAYNVFSGCDGVVDLVSKNAMVAACCRDGKMDMALNVFWKNPEFNDTVSWNTLIAGYVQNGYMERALTLFIEMIEKGIEYNQHTLASVLSACTGLKCLKLGKCVHALVLKNDGCSNQFVSSGIVDFYCKCGNMRYAESVYAGIGIKSPFATSSLIAGYSSKGNMTKAKRLFDSLSERNYVVWTALCSGYVKSQQCEAVFKLFREFRTTEALIPDTMIIVNVLGACAIQATLSLGKQTHAYILRTKLNMDEKLASALVDMYSKCGNIAYAEKSFQLVTDSDRDVILYNVMIAGYAHHGFENKAIQLFQEMLKISLKPDAITFVALLSACRHRGLVELGEKFFMSMKEDYNVLPEIYHYACMVDMYGRGNQLEKAVEFMRKIPIQIDATIWGAFLNACKINNNTTLVKQAEEELLKVEADNGSRYVQLANVYAAEGKWNEMGRIRKEMRGKEATKLPGCSWIYVENGIHVFTSGDTSHSKADAIYSTLVCLYGKLYLTFTELKQLDEIQGNIVADIF* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0543 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Lja3g0543 695 Coils Coil 578 598 - -
Lja3g0543 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 27 61 IPR002885 -
Lja3g0543 695 Pfam PPR repeat 167 186 IPR002885 -
Lja3g0543 695 Pfam PPR repeat 197 218 IPR002885 -
Lja3g0543 695 Pfam PPR repeat 60 83 IPR002885 -
Lja3g0543 695 Pfam PPR repeat 29 57 IPR002885 -
Lja3g0543 695 Pfam PPR repeat 360 385 IPR002885 -
Lja3g0543 695 Pfam PPR repeat 536 559 IPR002885 -
Lja3g0543 695 Pfam PPR repeat 332 358 IPR002885 -
Lja3g0543 695 Pfam E motif 580 640 IPR046848 -
Lja3g0543 695 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 327 653 - -
Lja3g0543 695 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 16 220 - -
Lja3g0543 695 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 73 351 - -
Lja3g0543 695 TIGRFAM PPR: pentatricopeptide repeat domain 332 361 IPR002885 -
Lja3g0543 695 TIGRFAM PPR: pentatricopeptide repeat domain 228 261 IPR002885 -
Lja3g0543 695 TIGRFAM PPR: pentatricopeptide repeat domain 29 56 IPR002885 -
Lja3g0543 695 TIGRFAM PPR: pentatricopeptide repeat domain 465 497 IPR002885 -
Lja3g0543 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Lja3g0543 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Lja3g0543 695 Gene3D Tetratricopeptide repeat domain 462 680 IPR011990 GO:0005515
Lja3g0543 695 Gene3D Tetratricopeptide repeat domain 5 140 IPR011990 GO:0005515
Lja3g0543 695 Pfam PPR repeat family 462 508 IPR002885 -
Lja3g0543 695 Pfam PPR repeat family 226 272 IPR002885 -
Lja3g0543 695 Gene3D Tetratricopeptide repeat domain 278 413 IPR011990 GO:0005515
Lja3g0543 695 Gene3D Tetratricopeptide repeat domain 142 277 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0543 Lja-Chr3 5420199 5422286 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0543 64 666 Glycoside Hydrolase AT3G49170 31.188 9.21e-93 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0543 - - gmx:100803987 1147.5