Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0542 ATGCATGAAATAAAGTGGCGCTATTCTGGTTTCATGCAATGCAAGTTCATGGACCCTATAGTTTCAGTTTCAAGTCACAAGCGTTCCAACAGTGACCCAATGAAAAGGAGAGTCATGGAAGAAGAATCAGAGAACAACAGTGAAACCTGTTATACGTCTAAAGTGGAACTGGGAGATCTAAAGCAAAGCATAGAATCCAAGAAGAGGCAGTACCACAATATGGATCTTCAAAGTTCTTTGACTCTAGAGATTCTACAGCTTCAAAAACGATTACAGCAACAATTTGTGATACGCCGTGCATTAGAGAAAGCATGTTATCTTCCTTTCTCACAGGATGCTATAGTAGAAAATTCAATCCCCAAGGCTGCAAGGGAACTGATTAAGGATATTGGAAAATTAGAATTAGAAATCATGTATTTGGAACAGTATCTCCTCTCTTTGTATCGGAAAATATTCAATCAACAAATTTCAACCAAGGGAAGAAGATTGGAATTAGCTACAGACATCAACAAAGGAACTTTTACAGAACCTAACAACTGTGCTATCTCTGACAAAGAAATTTCAGTTCTGCACTCTAGTCATCTAATTTCACCCAGAAGTTCAGCTAGCCATCATCAGCTCAAGGAATGCAGTAACCAGTTAGAACCAGAATCTGTTTTAGACTCTAGTATTCATAGGTGTTACTCTGCATTATCTCAACAAACTGCTTTCTCAATTGAAGCTTCTCCTGGGAAAATTAAGACGAAAGCTTTAGAATGTTATCATTCTCTACCATTATCCATGCTAGAGCATGCTGAGTGTACTAAATCCAATTCAACCAGCCTGGCTGAACATTTTGGGAGCTTCTATGTTGATAGTGTTCAAGAGACGCCAAATTGGTTATCTGAGGAGATTATTAAGTGTATATCAGCTATATATTGTGAACTTACAGAGCCGCCTTTAAATGTTTCATCCCCTAGTCCATGCTCCTCACCTGGTTATGAGGTACCTTCACAGAGGCAGGGTAGTAAGTGGGGATCACAGTGGAAGAAGCATTCATTCTTCAATTTAAACTCCAGCAACTCTTTCCATGTCAAAGGGTCAAAAGAATTTAGGGGACCTTATTGCTCAATGATGAGGATTCAGCAATTATGTACAGATAATCAAAAATTAAAAGAAATCGAGTACATGCTACGCAGATTTAGAACATTAGTTTCTCGGCTGGAAGAAGTTAATCCTAGAAACATGAAGCATGAAGAAAAGCTAGCTTTTTGGATTAATGTGCACAATGCTTTAGCAATGCATGCCTTACTAGTATACGGAATTTCAGCCAACAATGTCAAAAGAATGTCTTCAGTACTTAAGGCTGCATATAACATAGGGGGTCATACTATAAGTATAGACATGATACAGAACTTCATTCTGGGATGCAGATCGCCTCGTCCAGGACAATGGCTGCGGCTGTGGTTTCCTTCAAAGACAAAATCAAAGGTTAGAGATGCAAGCAAAGGTTATGCTATACGTCGTTCAGAACCCTTATTACTATTTGCTCTTTGCTCAGGAAGCCATTCTGATCCTGCGGTACGTTTGTATACAGCCAAGAGAGTCTTGGAGGAGCTAGAATCTGCGAAAGAAGAATATATTCAGTCCACACTCACTATAACCAAGGGACATAAAATAATTCTCCCAAAAATAGTTGATTCCTTCGCGAAAAACTCAGGTCTAGGAGCATCTGCTTTGTTGGGGATGGTTATGCCTTATCTACCTGATTCTCAAAGGAACAGCATTCAAGAGTGTCAATCAAATACAAGCTGGAAAGGCGTTGAATTAACCCCTCATGACTTCAATTTTCATTACCTTCTTTCAAAGGAATTAGCTTAG 1860 0.3909 MHEIKWRYSGFMQCKFMDPIVSVSSHKRSNSDPMKRRVMEEESENNSETCYTSKVELGDLKQSIESKKRQYHNMDLQSSLTLEILQLQKRLQQQFVIRRALEKACYLPFSQDAIVENSIPKAARELIKDIGKLELEIMYLEQYLLSLYRKIFNQQISTKGRRLELATDINKGTFTEPNNCAISDKEISVLHSSHLISPRSSASHHQLKECSNQLEPESVLDSSIHRCYSALSQQTAFSIEASPGKIKTKALECYHSLPLSMLEHAECTKSNSTSLAEHFGSFYVDSVQETPNWLSEEIIKCISAIYCELTEPPLNVSSPSPCSSPGYEVPSQRQGSKWGSQWKKHSFFNLNSSNSFHVKGSKEFRGPYCSMMRIQQLCTDNQKLKEIEYMLRRFRTLVSRLEEVNPRNMKHEEKLAFWINVHNALAMHALLVYGISANNVKRMSSVLKAAYNIGGHTISIDMIQNFILGCRSPRPGQWLRLWFPSKTKSKVRDASKGYAIRRSEPLLLFALCSGSHSDPAVRLYTAKRVLEELESAKEEYIQSTLTITKGHKIILPKIVDSFAKNSGLGASALLGMVMPYLPDSQRNSIQECQSNTSWKGVELTPHDFNFHYLLSKELA* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0542 619 Pfam Leucine-zipper of ternary complex factor MIP1 75 154 IPR025757 -
Lja3g0542 619 PANTHER UNCHARACTERIZED 18 619 - -
Lja3g0542 619 MobiDBLite consensus disorder prediction 29 44 - -
Lja3g0542 619 MobiDBLite consensus disorder prediction 25 46 - -
Lja3g0542 619 Pfam Protein of unknown function, DUF547 406 541 IPR006869 -
Lja3g0542 619 PANTHER TERNARY COMPLEX FACTOR MIP1 LEUCINE-ZIPPER PROTEIN 18 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0542 Lja-Chr3 5413684 5418867 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0542 - - gmx:100803450 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0542 3 5413684 5418867 Lja3g0542 3 5413684 5418867 ECH